circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Using RNA-Seq data to improve microRNA target prediction accuracy in animals

A command line version of the psRNATarget workflow that predicts potential miRNA target locations on a genome.

miRSM: Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information

Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data

Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

Web application for accessing data generated by FilTar

Database of pairwise consensuses for miR-mRNA target interactions

My Final Year Project - miRNA Target Prediction by adapting it to Next Sentance Prediction and assessing the performance of SOTA NLP architectures on the problem.

multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction

Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach

R package for retrieving miRNA data from the web