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mirna-seq

Here are 14 public repositories matching this topic...

eandresleon / miARma-seq

miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis

rna-seq-analysis mirna rnaseq-pipeline circrna-pipeline mirna-seq

Updated Apr 27, 2022
Perl

HuaZou / bioinformatics_pipeline

Bioinformatics Pipeline

rna-seq snakemake pipeline metagenomics methylation data-analysis amplicon tcga-data geo-data mirna-seq

Updated Oct 7, 2022
R

sing-group / my-brain-seq

myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry

docker pipeline differential-expression mirna compi mirna-seq

Updated Apr 24, 2023
R

CCBR / Pipeliner

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

quality-control rna-seq chip-seq whole-exome-sequencing whole-genome-sequencing single-cell-rna-seq mirna-seq

Updated Jul 13, 2023
Python

hacktrackgnulinux / miranda

[Tools] miRanda: An miRNA target scanner that aims to predict mRNA targets for microRNAs using dynamic-programming alignment and thermodynamics

miranda mirna micrornas mirna-seq

Updated Dec 30, 2022
C

vivekruhela / miRSim

miRSim Synthetic Sequence Simulator

rna-seq bioinformatics-analysis pirna bioinformatics-tool mirna-seq synthetic-sequence-simulator

Updated May 10, 2023
Jupyter Notebook

sivkri / small-RNA-Seq-Analysis

scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results

bioinformatics next-generation-sequencing rna-seq-analysis mirna mirna-seq gene-expression-analysis mirna-sequencing small-rna-analysis

Updated Jun 9, 2023
Shell

UVIC_TFM_AGomez_2023

antoniogomez / UVIC_TFM_AGomez_2023

Scripts of Final Master Project

qtl eqtl qtl-analyses qtl-mapping gwas-tools mirna-seq

Updated Sep 7, 2023
R

OpenOmics / mir-seek

An awesome microRNA-sequencing pipeline

snakemake singularity mirna mirdeep2 mirna-seq micro-rna micro-rna-expression mature-mirna

Updated Oct 1, 2024
Python

Mahsa-Ehsanifard / ceRNA-network

multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction

rstudio cerna mirna-mrna-interaction mirna-targets mirna-database mirna-seq lncrna-rna gene-mirna-lncrna

Updated Aug 22, 2024
R

MIRit

jacopo-ronchi / MIRit

An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.

mirna mirna-mrna-interaction mirnaseq-analysis mirna-seq

Updated Oct 23, 2024
R

th789 / fflmediation

R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.

transcription-factors gene-expression gene-regulation mediation-analysis gene-network gene-regulatory-network gene-interaction-networks mirna-seq mrna-seq

Updated Jun 8, 2022
R

systemPipeR / SPmirnaseq

Workflow Template

workflow development systempiper-workflows systempiper mirna-seq

Updated Apr 4, 2024
TeX

bmunn99 / Clemson-Grad-R-scripts

All the R scripts I used during my time as a grad student at Clemson University

rna-seq pearson-correlation protein-expression leafcutter mirna-seq stability-predictions western-blot

Updated Nov 8, 2023
R

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