Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models

MCell Monte Carlo Simulator of Cellular Microphysiology

Creates a Blender Object from an SWC formatted file

Set of tools in Blender to create models for MCell/Neuron hybrid simulations

Repository for models, descriptions, and software supporting the 2020 Workshop

AMPA receptor trafficking and its role in heterosynaptic plasticity (Antunes et al 2018)

Provides a simple web interface for running MCell

Action potential-evoked Ca2+ signals in CA1 pyramidal cell presynaptic terminals (Hamid et al 2019)

This repository contains all the code used for the publication "Mitochondria morphology provides a mechanism for energy buffering at synapses ".

Rule Based Modeling using MCell, NFsim, and bionetgen

The MCell Quick Reference Guide

Active zone model of Ca2+ secretion coupling (Keller et al. 2015)

mouse neuromuscular junction AZ

Modeling temperature changes in AMPAR kinetics (Postlethwaite et al 2007)

Synaptic vesicle fusion model (Church et al 2021)

Project to create an MCell tool that works within Galaxy

Analytical modelling of temperature effects on an AMPA-type synapse (Kufel & Wojcik 2018)