maximum-entropy-model

Here are 8 public repositories matching this topic...

anyuzx / HIPPS-DIMES

Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method

fish hi-c maximum-entropy-model multiplexed-imaging-analysis chromosome-reconstruction chromosome-organization maximum-entropy-principle maximum-entropy-distribution

Updated Aug 6, 2024
Jupyter Notebook

ahmedaq / MPF-BML-GUI

Star

Minimum Probability Flow-Boltzmann Machine Learning (MPF-BML) standalone GUI-based application for the inference of maximum entropy distribution parameters

windows macos linux application package cross-platform ubuntu parameters standalone estimation ising-model potts-model boltzmann-machine gui-based maximum-entropy-model mpf-bml minimum-probability-flow

Updated Dec 18, 2019

clelidm / SpinModels

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Set of basic programs to generate data and fit data with spin models with high order interactions.

inference maximum-likelihood-estimation maximum-entropy-model high-order-interaction spin-model

Updated Aug 12, 2021
C++

ahmedaq / PV-vp1

Star

Software for inferring the intrinsic fitness landscape of poliovirus capsid protein (vp1) and comparing it with that of analogous proteins in HIV

evolution computational-biology monte-carlo-simulation hiv temporal-analysis statistical-physics fitness-landscape hiv-envelope-glycoproteins maximum-entropy-model poliovirus landscape-peaks-analysis zero-temperature-monte-carlo polio-outbreaks evolutionary-constraints landscape-comparison hiv-gag hiv-gp160 vp1 geographical-analysis

Updated Dec 18, 2019
MATLAB

Computational framework for solving the radiative transfer equation in one spatial dimension using a Godunov-type finite volume method with piecewise linear reconstruction of the solution within each cell of the computational domain.