Registry of containerized biosimulation tools that support a standard command-line interface

Basic Mathematic Model | Study Notes & Demos

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Code associated with the Karr Lab's 2018 whole-cell modeling review in Current Opinion in Biotechnology

"Circling in on Convective Self-Aggregation" published in Journal of Geophysical Research: Atmospheres (2021)

A Mathematical Model for Orbit Debris Proliferation. This project also includes Jacobian analysis for finding equilibrium solutions and stability point.

Data, code and interactive figures for the preprint "Quantitative analysis of tumour spheroid structure”.

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Simulation of a Mathematical Model of Homeostatic Regulation of Sleep-Wake Cycles by Hypocretin/Orexin (Postnova et al., 2009)

This portfolio brings together all the major projects I carried out during my training at the National Advanced School Of Engineering of Yaoundé.