Microassembly based somatic variant caller for NGS data
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Updated
Jun 23, 2022 - C
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local-assembly
Here are 3 public repositories matching this topic...
find large indels (in the blind spot between GATK/freebayes and SV callers)
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Updated
Dec 3, 2017 - Nim
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
nanopore
cancer
phase
immunity
hla-typing
pacbio-data
local-assembly
loh
haplotype
reads-binning
hla-sequence
loss-of-heterozygosity
genotype-frequency
allelic-imbalance
human-leukocyte-antigens
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Updated
Sep 25, 2024 - C++
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