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hmmer3

Here are 7 public repositories matching this topic...

althonos / pyhmmer

Cython bindings and Python interface to HMMER3.

bioinformatics python-library python-bindings hidden-markov-model cython-library hmmer sequence-analysis hmmer3

Updated Nov 5, 2024
Cython

faylward / viralrecall

Detection of NCLDV signatures in 'omic data

genomics viruses hmmer3 ncldv viral-signatures viral-regions nucleocytoviricota

Updated Jul 5, 2024
Python

laelbarlow / amoebae

Workflow for identifying and classifying homologous gene/protein sequences

bioinformatics python3 biopython gene-families genome-annotation blast comparative-genomics molecular-evolution similarity-search protein-families orthology homology snakemake-workflow hmmer3 transcriptome-annotation coulson-plot

Updated Nov 7, 2024
Python

goldman-gp-ebi / protein-identification-manuscript

hmm hidden-markov-model hmmer protein-identification hmmer3 protein-sequencing nanopore-protein-sequencing

Updated Sep 29, 2024
Jupyter Notebook

AaronFeller / Cinful_v2

HMMER-based microcin search using full microcin sequences and double-glycine signal region.

search hmm bioinformatics-pipeline blast hidden-markov-model hmmer antimicrobial-peptides hmmer3 bacterial-genome-analysis microcin

Updated Sep 24, 2024
Jupyter Notebook

laelbarlow / jackhmmerer

A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.

protein-sequences similarity-search homology-search snakemake-workflow hmmer3 jackhmmer evalue-thresholds

Updated Apr 13, 2021
Python

furacca / brivez

Brivez is a bioinformatic tool thought as Quality of Life's improvement, providing high quantity of data in a snap, giving you a quick view on what you could find inside your transcriptome/sequences' list.

python3 protein fasta bash-script transcriptome protein-domains deepsig bioinformatic-tools hmmer3 transcriptome-analysis

Updated Feb 22, 2023
Python

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