This Snakemake pipeline implements the GATK best-practices workflow
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Updated
Jun 8, 2023 - Python
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genomic-variant-calling
Here are 4 public repositories matching this topic...
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
snakemake
variant-calling
population-genetics
variant-calls
snakemake-workflow
pool-sequencing
ancient-dna
evolve-and-resequence
genomic-variant-calling
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Nov 27, 2024 - Python
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
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Nov 26, 2024 - Python
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
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Updated
Jun 30, 2021 - Python
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