Tools for fast and flexible genome assembly scaffolding and improvement

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Long-reads Gap-free Chromosome-scale Assembler

Tools for Downloading, Customizing, and Processing Time Series of Satellite Images from Landsat, MODIS, and Sentinel

Close assembly gaps using long-reads at high accuracy.

A scalable implimentation of HANTS for time sereis reconstruction in remote sensing on Google Earth Engine platform

KEGG Module Evaluation Tool

Gap2Seq is a gap filling and insertion genotyping tool.

YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.

GapFill: gap filling functions for motion capture marker data

hesseflux provides functions used in the processing and post-processing of the Eddy covariance flux data of the ICOS ecosystem site FR-Hes.

Time series processing library

Missing earthquake data reconstruction in the space-time-magnitude domain

Value propagation-based spatial/spatio-temporal interpolation

Toolkit created to do extraction, gap-filling and trend analysis over Sentinel 2 time-series from Earth Engine

Python library for quality control and reconstruction of meteorological data

COMMIT: Community-dependent gap-filling considering metabolite leakage

A gap filling tool for genomes that utilizes PacBio long reads