BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
bioinformatics
genome-analysis
genome-assembly
blend
read-mapping
de-novo-assembly
minimizers
strobemers
seed-matching
fuzzy-seeds
read-overlapping
spaced-seeds
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Updated
May 10, 2023 - C