Nanopore demultiplexing, QC and alignment pipeline

Lima - Demultiplex Barcoded PacBio Samples

Parse Illumina sample sheets with Python

Maximum likelihood demultiplexing

Demultiplexing pipeline for sequencing data

Single cell Nanopore sequencing data for Genotype and Phenotype

Please switch to https://github.com/OpenGene/defastq

Fast and accurate sequence demultiplexing

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

Comprehensive pipeline for donor demultiplexing in single cell

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

🍸 Web-based database system for flow cell management (incl. REST API)

fast, reliable and handy demultiplexing tool for fastx files

mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

deMULTIplex2: robust sample demultiplexing for scRNA-seq

Simple management of Illumina sequencing flowcells

snakemake workflow for basecalling and demultiplexing of ONT sequencing data

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

Demultiplexing utility, companion to flowcelltool.