An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

3D Analysis of confocal images of microbial biofilms/communities

🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

Semi-automated script for detection and quantification of c-Fos cells in IHC stained confocal stack images

A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. …

[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.

Python project using Pyimagej to filter images, quantify and analyse particles in mouse brain slices.