Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
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Oct 29, 2024 - Python
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chloroplast
Here are 14 public repositories matching this topic...
Iterative Organellar Genome Assembly
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Jun 9, 2020 - Python
LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
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Jul 31, 2024 - Python
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
genome
transcriptome
protein-coding-genes
mitochondrial
chloroplast
contigs
plastome
genome-skimming
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Feb 15, 2021 - Perl
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Oct 13, 2021 - Python
Molecular Sequence Manipulation Tools
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Dec 9, 2022 - R
Advancing chloroplast synthetic biology through high-throughput plastome engineering of Chlamydomonas reinhardtii
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Apr 30, 2024 - Python
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
bioinformatics
random-forest
r-package
hmmer
chloroplast
plastid
subchloroplast-localization
subplastid-localization
hmm-profile
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May 24, 2023 - R
Chloroplast genome assembly, annotation and phylogenetic relationships of different populations of flowering plants
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Nov 9, 2024 - Nextflow
Do you like plants? If yes, check out my program which tries simulate a chloroplast!
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Jun 17, 2021 - Python
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Jan 14, 2020 - MATLAB
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
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Apr 2, 2022 - Shell
Chloroplast 16S removal from Metagenomics samples (or any NGS samples)
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Feb 14, 2018 - Python
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