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Updated
Jan 1, 2024 - Jupyter Notebook
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cellprofiler-pipeline
Here are 7 public repositories matching this topic...
CellProfiler pipeline and ImageJ workflow developed for segmentation of H2B_FUCCI2a_MCF7 cell nuclei for per-nucleus and background fluorescence intensity measurement. Example workflows for downstream cell cycle analysis are also provided in this repository.
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Nov 17, 2024 - R
Scripts and figures as a part of an ongoing research initiative for Advancing Hepatocellular Carcinoma Staging and Prognosis
deep-neural-networks
tensorflow
machine-learning-algorithms
python3
feature-extraction
segmentation
resnet
feature-engineering
stain-normalization
dataaugmentation
adasyn-sampling
cellprofiler-pipeline
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Jul 19, 2024 - Jupyter Notebook
OrganelleProfiler and OrganelleContentProfiler pipelines for CellProfiler as described in Laan et al (PLoS ONE, 2023)
cellprofiler
imaging
cell-biology
endothelial-cells
vwf
cellprofiler-pipeline
weibel-palade-bodies
secretory-pathway
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Updated
Apr 26, 2023
Measure distances between two types of markers during FISH Assay after Chromosomal Translocation event
workflow-automation
distance-calculation
bioimage-analysis
snakemake-workflow
napari-visualization
cellprofiler-pipeline
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Updated
Sep 25, 2024 - Python
ImageJ macros for preparation of single images from stacks with maximum intensity projections and partially automated selection of slices in focus. CellProfiler Pipeline for yH2AX and 53BP1 counting and mitotic cells segmentation in asynchronous cultures. R scripts for processing of CellProfiler output.
cellprofiler
cellprofiler-pipeline
cellprofiler-analysis
mitotic-cells-segmentation
maximum-intensity-projections
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Updated
May 11, 2021 - R
Test of Uniformity for centrosome orientation at early timepoints during Wound Healing Assay
workflow-automation
bioimage-analysis
snakemake-workflow
uniformity-tests
fiji-macro-language
cellprofiler-pipeline
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Updated
Sep 25, 2024 - R
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