Platform for Calcium Imaging analysis. DEPRECATED.
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
Analysis code for the OpenScope Credit Assignment project.
Mesmerize plugin for the napari viewer
Calcium Imaging Data ANalysis software
Computational analysis of neuronal ensembles and travelling waves in neural activity from the cerebral cortex of the fat-tailed dunnart
Fully automated calcium imaging analysis Workflow
Supervisors: Dr. Patrick Piantadosi and Dr. Andrew Holmes
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Spike2 script for handling calcium imaging data. The program cleans the data, visualizes it, and extracts features of the detected calcium signals. It creates two output files: a txt file holding the clean data values for all cells, and a csv file containing a summary of the results obtained.
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.
Add manual Calcium scores measurements to REDCap
CalciumImaging analysis matlab pipeline for suite2p outputs
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Add a description, image, and links to the calcium-imaging-analysis topic page so that developers can more easily learn about it.
To associate your repository with the calcium-imaging-analysis topic, visit your repo's landing page and select "manage topics."