An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

R script for GenBank sequences names changing, filling-in missing molecular markers data and sequences concatenation

Drosophila simulans genome package forged for BSgenome

An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.

Drosophila mauritania genome package forged with BSgenome