⚡ ♒ Rapid prokaryotic genome annotation

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

A flexible pipeline for complete analysis of bacterial genomes

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

Bioinformatics tool to find integrons in bacterial genomes

Simple bacterial assembly and annotation pipeline

Split Kmer Analysis

Genomic neighbor typing of bacterial pathogens using MinHash 🐀

Fast k-mer based tool for multi locus sequence typing (MLST)

Machine-learning-based general bacterial promoter prediction tool.

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

Phage-Host Interaction Search Tool

An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences

Combining de novo and reference-guided assembly with Scaffold_builder

genome sized sequences clustering

Various scripts for efficient processing of 10k Salmonella genomes

PowerBacGWAS: Power calculations for Bacterial GWAS