1000 Genomes Project Metadata R Package

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.

GTM and t-SNE classification and clustering of 1000 Genomes Project populations

📙 Explore 1000 Genomes variant data with JavaScript.

A PBWT-based light index for UK Biobank scale genotype data.

GWAS Pre-Processing Pipeline

Find risk snp in the LD region of GWAS snps by convolutional neural network

A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

Predicting 1000 Genomes population using PCA and a random forest classifier

Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation

Map 1000genomes location to a worldmap

The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.

A Python script that generate population genotype frequency file from 1000G data

Concordance Validation across Experiments

An extendable parser for vcf files written in C++

Visualizing Linkage Disequilibrium using 1000 Genomes Data

Snakemake workflow to test μ-PBWT against PBWT and Syllable-PBWT

This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.