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Bump org.eclipse.jgit:org.eclipse.jgit from 4.5.4.201711221230-r to 5.13.3.202401111512-r in /zeppelin-zengine #1

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@dependabot dependabot bot commented on behalf of github Sep 19, 2024

Bumps org.eclipse.jgit:org.eclipse.jgit from 4.5.4.201711221230-r to 5.13.3.202401111512-r.

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Reamer and others added 30 commits August 24, 2022 22:33
Remove one `ldapRealm.contextFactory.authenticationMechanism`
Bumps hadoop-common from 3.2.3 to 3.2.4.

---
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- dependency-name: org.apache.hadoop:hadoop-common
  dependency-type: direct:development
...

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* [MINOR] fix rimraf version

* fix rimraf version in zeppelin-web/package-lock.json
Bumps [gson](https://github.com/google/gson) from 2.8.2 to 2.8.9.
- [Release notes](https://github.com/google/gson/releases)
- [Changelog](https://github.com/google/gson/blob/master/CHANGELOG.md)
- [Commits](google/gson@gson-parent-2.8.2...gson-parent-2.8.9)

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- dependency-name: com.google.code.gson:gson
  dependency-type: direct:production
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Bumps [gson](https://github.com/google/gson) from 2.8.5 to 2.8.9.
- [Release notes](https://github.com/google/gson/releases)
- [Changelog](https://github.com/google/gson/blob/master/CHANGELOG.md)
- [Commits](google/gson@gson-parent-2.8.5...gson-parent-2.8.9)

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- dependency-name: com.google.code.gson:gson
  dependency-type: direct:production
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Bumps [gson](https://github.com/google/gson) from 2.8.6 to 2.8.9.
- [Release notes](https://github.com/google/gson/releases)
- [Changelog](https://github.com/google/gson/blob/master/CHANGELOG.md)
- [Commits](google/gson@gson-parent-2.8.6...gson-parent-2.8.9)

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- dependency-name: com.google.code.gson:gson
  dependency-type: direct:production
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Bumps xercesImpl from 2.11.0.SP5 to 2.12.2.

---
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  dependency-type: direct:production
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Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.3.3 to 42.4.1.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.3.3...REL42.4.1)

---
updated-dependencies:
- dependency-name: org.postgresql:postgresql
  dependency-type: direct:production
...

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* build: harden frontend.yml permissions
Signed-off-by: Alex <aleksandrosansan@gmail.com>

* build: harden core.yml permissions
Signed-off-by: Alex <aleksandrosansan@gmail.com>
* [ZEPPELIN-5694] Support apache kyuubi

* SUPPORT KERBEROS MODE
* passing static arguments to spark-submit command so driver can pick them up

* fixed static names

* removed duplicate driver memory setting

* fixed driver extra java opts

* extend test

* use ZEPPELIN_SPARK_CONF env var to pass spark configurations

* fix import wildmark

* fix separator

* remove redundant concatenation

* - remove redundant concatenation
- fix tests
Notably, this version no longer overwrites the protoc compiler
executable each time the project is built, which is convenient
on systems where it needs some post-processing (current NixOS).
From 0.6.0 onwards the archive name is prefixed with 'apache-'.

As far as I can see there are no scripts that still want to support
older versions of livy, so it is probably safe to update the script
like this. I did not test beyond invoking the script.
### What is this PR for?
This PR updates scala for the cassandra interpreter to 2.12

### What type of PR is it?
- Improvement

### Todos
* [ ] - Verify with real Cassandra Backend

### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-5833

### How should this be tested?
* CI

### Questions:
* Does the licenses files need to update? Yes
* Is there breaking changes for older versions? Yes
* Does this needs documentation? No

Author: Philipp Dallig <philipp.dallig@gmail.com>

Closes apache#4479 from Reamer/cassandra_jdk11 and squashes the following commits:

4ba0dbc [Philipp Dallig] Enable Cassandra for JDK11
…supported.

### What is this PR for?
This PR updates Hadoop 2.6 dependencies to 2.7.

### What type of PR is it?
Improvement

### What is the Jira issue?
* https://issues.apache.org/jira/browse/ZEPPELIN-5834

### How should this be tested?
* CI

### Questions:
* Does the licenses files need to update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No

Author: Philipp Dallig <philipp.dallig@gmail.com>

Closes apache#4484 from Reamer/hadoop_jdk11 and squashes the following commits:

88d3d47 [Philipp Dallig] Remove last references to Hadoop 2.6 as JDK11 is not supported.
…mote

### What is this PR for?
Configures ivy to download jar libraries only from remote and ignore local jars

### What type of PR is it?
 * Hot Fix

### What is the Jira issue?
 * https://issues.apache.org/jira/browse/ZEPPELIN-5819

### How should this be tested?
* CI

### Questions:
* Does the licenses files need to update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No

Author: Philipp Dallig <philipp.dallig@gmail.com>

Closes apache#4495 from Reamer/ivy_download and squashes the following commits:

b74631a [Philipp Dallig] Configures ivy to download jar libraries only from remote
…ml (apache#4439)

* Fix the wrong Docker image name

- There has never been any Docker image named `zeppelin-interpreter` or `zeppelin-server`.
- The latest version also should be 0.10.1

* Add more instructions for running Zeppelin on K8s

- How to build zeppelin-distribution
- How to build zeppelin-server
- How to build zeppelin-interpreter
- How to use ./k8s/zeppelin-server.yaml script to correctly launch Zeppelin on Kubernetes cluster

* Adding a reminder to adjust images' names

This commit will remove the step-by-step editing of zeppelin-server.yaml and replacing it with a simple reminder to adjust the names in this file
…pache#4494)

* Scala adjustments with jdk11

* Update some interpreter to support jdk11
Bumps commons-text from 1.8 to 1.10.0.

---
updated-dependencies:
- dependency-name: org.apache.commons:commons-text
  dependency-type: direct:production
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Henry-Hong and others added 26 commits August 18, 2024 17:41
…le HMR (apache#4787)

* [ZEPPELIN-6053] Fix(zeppelin-web): upgrade webpack-dev-server (3.3.10 -> 4.14.2)

* [ZEPPELIN-6053] Docs(zeppelin-web): Update webpack-dev-server reference link

* [ZEPPELIN-6053] Fix(zeppelin-web): change mathjax ver to original ver

* [ZEPPELIN-6053] Fix(zeppelin-web): webpack static config

* [ZEPPELIN-6053] Fix(zepplin-web): reinstall package.lock

* [ZEPPELIN-6053] Fix(zepplin-web): fix dependencies version
* Allow Different ZEPPELIN_HOME Variables for Host and Container

* Avoid Injecting Host JAVA_HOME into Container Environments

* Avoid injecting host PATH env variable into container envs

* Fix interpreter dockerfile for docker run mode

* Increased initial sleep time to ensure Docker interpreter process starts successfully

* Fix interpreter Dockefile base image tag

Co-authored-by: Jongyoul Lee <jongyoul@gmail.com>

* Fix checkstyle

* Bump Spark version in dockerfile to 3.5.1

* Update scripts/docker/interpreter/Dockerfile MAINTAINER

Co-authored-by: Cheng Pan <pan3793@gmail.com>

* Change dockerfile MAINTAINER instruction to LABEL instruction

- MAINTAINER instruction is deprecated

* Change default zeppelin.docker.container.spark.home configuration to '/opt/spark'

- To align it with Spark on K8S mode

* Change Spark version and bin name variables in interpreter dockerfile

* Fix interpreter dockerfile

---------

Co-authored-by: Jongyoul Lee <jongyoul@gmail.com>
Co-authored-by: Cheng Pan <pan3793@gmail.com>
…ck start (apache#4776)

* [ZEPPELIN-6032] Add files: docker-compose.yml, .env.template

* [ZEPPELIN-6032] Fix ZEPPELIN_IMAGE_TAG and docker-compose filename

* [ZEPPELIN-6032] Add README.md

* [ZEPPELIN-6032] Add Apache License to .env.template

* [ZEPPELIN-6037] Unify the ZeppelinConfiguration variable to zConf in all files

* Revert "[ZEPPELIN-6037] Unify the ZeppelinConfiguration variable to zConf in all files"

This reverts commit 8d5b3c5.

* [ZEPPELIN-6032] Moving docker compose file

* [ZEPPELIN-6032] Change the docker-compose command to docker compose

* [ZEPPELIN-6032] Remove the version from the YAML file
* [ZEPPELIN-6038] Unify the Logger variable to LOGGER in all files

* [ZEPPELIN-6038] Set all logger constants to private static final

* [ZEPPELIN-6038] Adjust code character length

* [ZEPPELIN-6038] Refactor logger variable

* [ZEPPELIN-6038] Revert code for automatically generated files

* [ZEPPELIN-6038] Fix code syntax
…n page (apache#4803)

* docs: Fix broken links on the Apache Shiro authentication page

* Update docs/setup/security/shiro_authentication.md

---------

Co-authored-by: Cheng Pan <pan3793@gmail.com>
* Simple changes

* Rename SchedulerThreadFactory to NamedThreadFactory

* some small change in job - SimpleDateFormat is not threadsafe, and there is no need to keep the object in memmory

* Remove change in InterpreterContext
* Change default web UI to new UI

* Rename web app context variables

* Fix keyword "Old" -> "Classic"

* Fix UI switch button phrases

* Change build profile for web UI

* Change configuration name (zeppelin.war -> zeppelin.classic.war)

* Change configuration name (zeppelin.angular.war -> zeppelin.war)

* Rename zeppelin-web to zeppelin-web-classic

* Rename zeppelin-web-angular to zeppelin-web

* Revert "Rename zeppelin-web-angular to zeppelin-web"

This reverts commit e53d069.

* Revert "Rename zeppelin-web to zeppelin-web-classic"

This reverts commit f9fe986.

* Revert "Change configuration name (zeppelin.angular.war -> zeppelin.war)"

This reverts commit 137d371.

* Revert "Change configuration name (zeppelin.war -> zeppelin.classic.war)"

This reverts commit 07bdf91.

* Fix selenium test build profile

* Fix e2e-tests profile

* Fix core.yml build profiles

* Fix DirAccessTest

* Fix zeppelin-integration url

* Fix rat check exclusion

* Add classic webapp path checking in zeppelin-daemon.sh
…pache#4809)

* Bypass decorator removing by AOT compilation

* Add comment

* Add license
…pache#4794)

* refactor: Reformat shell interpreter command in Dockerfile

* docs: Fix capitalization in shell interpreter README

* feat: Write a Dockerfile for jdbc interpreter image build
…e#4815)

* Add support for bq single region dataset query

* Remove duplicate code

* Resolve review comments

* Updated documentation

* Improved region check for bq interpreter
…4826)

* Fix flaky SparkParagraphIT.testCancelPyspark

* Fix flaky PersonalizeActionsIT.testGraphAction
…hangup (apache#4800)

* [ZEPPELIN-1480] synchronize websocket sync to prevent issues with blocked websockets due to multithreading

* [ZEPPELIN-1480] use async call to websocket for sending

also add debug logging to the class

* [ZEPPELIN-1480] improve error logging

* [ZEPPELIN-1480] re-add license text

* [ZEPPELIN-1480] remove debug logging from getters

* [ZEPPELIN-1480] fix indentation
This PR is reopening apache#4806 

### What is this PR for?
Previous pty4j dependency version does not support Silicon OSX
So `%sh.terminal` interpreter did not work on Silicon OSX.
To fix this, I bumped pty4j version to 0.12.35

The previous `pty4j` dependency version does not support macOS on Apple Silicon.
As a result, the `%sh.terminal` interpreter did not work on Apple Silicon macOS.
To fix this issue, I have updated the `pty4j` verison to `0.12.35`

### What type of PR is it?
Bug Fix

### What is the Jira issue?
* Open an issue on Jira https://issues.apache.org/jira/browse/ZEPPELIN/6071

### How should this be tested?

- Run `%sh.terminal` interpreter
  - Main focus : Test on a Mac with Apple Silicon to ensure it works correctly.
  - The native files for other OS/architectures have also changed to match the library version downgrade. It would be helpful to verify that it functions properly on these other OS/architectures as well.

### Screenshots (if appropriate)

#### Before

<img width="1498" alt="image" src="https://github.com/user-attachments/assets/2ee6c9f9-7a1c-41d0-831a-900949d2c9bc">

- The interpreter was not working, and these error logs were generated:
```
ERROR [2024-09-01 14:10:18,305] ({Thread-11} PtyHelpers.java[<clinit>]:231) - Cannot load implementation of interface com.pty4j.unix.PtyHelpers$OSFacade
java.lang.UnsatisfiedLinkError: Can't load library: /var/folders/bt/g5zw1jfn36783j9xvwl6pmg80000gn/T/jna-738948474/jna9752198374376500371.tmp
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2638)
	at java.base/java.lang.Runtime.load0(Runtime.java:768)
	at java.base/java.lang.System.load(System.java:1854)
	at com.sun.jna.Native.loadNativeDispatchLibraryFromClasspath(Native.java:947)
	at com.sun.jna.Native.loadNativeDispatchLibrary(Native.java:922)
	at com.sun.jna.Native.<clinit>(Native.java:190)
	at com.pty4j.unix.macosx.OSFacadeImpl.<clinit>(OSFacadeImpl.java:91)
	at com.pty4j.unix.PtyHelpers$1.call(PtyHelpers.java:200)
	at com.pty4j.unix.PtyHelpers$1.call(PtyHelpers.java:196)
	at com.pty4j.util.LazyValue.getValue(LazyValue.java:25)
	at com.pty4j.unix.PtyHelpers.getOsFacade(PtyHelpers.java:244)
	at com.pty4j.unix.PtyHelpers.<clinit>(PtyHelpers.java:228)
	at com.pty4j.unix.Pty.ptyMasterOpen(Pty.java:141)
	at com.pty4j.unix.Pty.openMaster(Pty.java:193)
	at com.pty4j.unix.Pty.<init>(Pty.java:56)
	at com.pty4j.unix.UnixPtyProcess.<init>(UnixPtyProcess.java:83)
	at com.pty4j.PtyProcessBuilder.start(PtyProcessBuilder.java:111)
	at com.pty4j.PtyProcess.exec(PtyProcess.java:78)
	at com.pty4j.PtyProcess.exec(PtyProcess.java:49)
	at org.apache.zeppelin.shell.terminal.service.TerminalService.initializeProcess(TerminalService.java:88)
	at org.apache.zeppelin.shell.terminal.service.TerminalService.lambda$onTerminalReady$0(TerminalService.java:62)
	at java.base/java.lang.Thread.run(Thread.java:829)
 INFO [2024-09-01 14:10:18,324] ({Thread-11} ExtractedNative.java[doInit]:127) - Extracted pty4j native in 17 ms
ERROR [2024-09-01 14:10:18,325] ({Thread-11} PtyHelpers.java[<clinit>]:237) - Cannot load native pty executor library
java.lang.NoClassDefFoundError: Could not initialize class com.sun.jna.Native
	at com.pty4j.unix.NativePtyExecutor.<init>(NativePtyExecutor.java:14)
	at com.pty4j.unix.PtyHelpers$2.call(PtyHelpers.java:222)
	at com.pty4j.unix.PtyHelpers$2.call(PtyHelpers.java:218)
	at com.pty4j.util.LazyValue.getValue(LazyValue.java:25)
	at com.pty4j.unix.PtyHelpers.getPtyExecutor(PtyHelpers.java:254)
	at com.pty4j.unix.PtyHelpers.<clinit>(PtyHelpers.java:234)
	at com.pty4j.unix.Pty.ptyMasterOpen(Pty.java:141)
	at com.pty4j.unix.Pty.openMaster(Pty.java:193)
	at com.pty4j.unix.Pty.<init>(Pty.java:56)
	at com.pty4j.unix.UnixPtyProcess.<init>(UnixPtyProcess.java:83)
	at com.pty4j.PtyProcessBuilder.start(PtyProcessBuilder.java:111)
	at com.pty4j.PtyProcess.exec(PtyProcess.java:78)
	at com.pty4j.PtyProcess.exec(PtyProcess.java:49)
	at org.apache.zeppelin.shell.terminal.service.TerminalService.initializeProcess(TerminalService.java:88)
	at org.apache.zeppelin.shell.terminal.service.TerminalService.lambda$onTerminalReady$0(TerminalService.java:62)
	at java.base/java.lang.Thread.run(Thread.java:829)
ERROR [2024-09-01 14:10:18,325] ({Thread-11} TerminalService.java[lambda$onTerminalReady$0]:64) - Cannot load implementation of interface com.pty4j.unix.PtyHelpers$OSFacade
java.lang.RuntimeException: Cannot load implementation of interface com.pty4j.unix.PtyHelpers$OSFacade
	at com.pty4j.unix.PtyHelpers.getOsFacade(PtyHelpers.java:247)
	at com.pty4j.unix.PtyHelpers.getInstance(PtyHelpers.java:262)
	at com.pty4j.unix.Pty.ptyMasterOpen(Pty.java:141)
	at com.pty4j.unix.Pty.openMaster(Pty.java:193)
	at com.pty4j.unix.Pty.<init>(Pty.java:56)
	at com.pty4j.unix.UnixPtyProcess.<init>(UnixPtyProcess.java:83)
	at com.pty4j.PtyProcessBuilder.start(PtyProcessBuilder.java:111)
	at com.pty4j.PtyProcess.exec(PtyProcess.java:78)
	at com.pty4j.PtyProcess.exec(PtyProcess.java:49)
	at org.apache.zeppelin.shell.terminal.service.TerminalService.initializeProcess(TerminalService.java:88)
	at org.apache.zeppelin.shell.terminal.service.TerminalService.lambda$onTerminalReady$0(TerminalService.java:62)
	at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.UnsatisfiedLinkError: Can't load library: /var/folders/bt/g5zw1jfn36783j9xvwl6pmg80000gn/T/jna-738948474/jna9752198374376500371.tmp
	at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2638)
	at java.base/java.lang.Runtime.load0(Runtime.java:768)
	at java.base/java.lang.System.load(System.java:1854)
	at com.sun.jna.Native.loadNativeDispatchLibraryFromClasspath(Native.java:947)
	at com.sun.jna.Native.loadNativeDispatchLibrary(Native.java:922)
	at com.sun.jna.Native.<clinit>(Native.java:190)
	at com.pty4j.unix.macosx.OSFacadeImpl.<clinit>(OSFacadeImpl.java:91)
	at com.pty4j.unix.PtyHelpers$1.call(PtyHelpers.java:200)
	at com.pty4j.unix.PtyHelpers$1.call(PtyHelpers.java:196)
	at com.pty4j.util.LazyValue.getValue(LazyValue.java:25)
	at com.pty4j.unix.PtyHelpers.getOsFacade(PtyHelpers.java:244)
	at com.pty4j.unix.PtyHelpers.<clinit>(PtyHelpers.java:228)
	... 10 more
```

#### After

<img width="1500" alt="image" src="https://github.com/user-attachments/assets/8a548b2c-e75b-4c6f-8607-7bbc4ac08159">

- The interpreter is now working as expected, just like any ordinary shell.

### Questions:
* Does the license files need to update? No
* Is there breaking changes for older versions? No
* Does this needs documentation? No


Closes apache#4822 from tbonelee/update-pty4j.

Signed-off-by: Cheng Pan <chengpan@apache.org>
### What is this PR for?

Update Copyright year.

### What type of PR is it?

Improvement

### What is the Jira issue?

N/A

### How should this be tested?

Review.

### Screenshots (if appropriate)

### Questions:
* Does the license files need to update?
* Is there breaking changes for older versions?
* Does this needs documentation?


Closes apache#4836 from MyLanPangzi/patch-1.

Signed-off-by: Cheng Pan <chengpan@apache.org>
### What is this PR for?

Follow the discussion in the mailing list, to drop support for Spark 3.2
https://www.mail-archive.com/devzeppelin.apache.org/msg37311.html

### What type of PR is it?

Breaking change.

### What is the Jira issue?

ZEPPELIN-6091

### How should this be tested?

Pass CI

### Screenshots (if appropriate)

### Questions:
* Does the license files need to update? No.
* Is there breaking changes for older versions? Yes.
* Does this needs documentation? Yes, updated.


Closes apache#4834 from pan3793/ZEPPELIN-6091.

Signed-off-by: Cheng Pan <chengpan@apache.org>
### What is this PR for?
A few sentences describing the overall goals of the pull request's commits.
First time? Check out the contributing guide - https://zeppelin.apache.org/contribution/contributions.html


### What type of PR is it?
Bug Fix
Improvement
Feature
Documentation
Hot Fix
Refactoring
*Please leave your type of PR only*

### Todos
* [ ] - Task

### What is the Jira issue?
* Open an issue on Jira https://issues.apache.org/jira/browse/ZEPPELIN/
* Put link here, and add [ZEPPELIN-*Jira number*] in PR title, eg. [ZEPPELIN-533]

### How should this be tested?
* Strongly recommended: add automated unit tests for any new or changed behavior
* Outline any manual steps to test the PR here.

### Screenshots (if appropriate)

### Questions:
* Does the license files need to update?
* Is there breaking changes for older versions?
* Does this needs documentation?


Closes apache#4837 from MyLanPangzi/patch-2.

Signed-off-by: Cheng Pan <chengpan@apache.org>
Bumps org.eclipse.jgit:org.eclipse.jgit from 4.5.4.201711221230-r to 5.13.3.202401111512-r.

---
updated-dependencies:
- dependency-name: org.eclipse.jgit:org.eclipse.jgit
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Sep 19, 2024
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CLAassistant commented Sep 19, 2024

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Thank you for your submission! We really appreciate it. Like many open source projects, we ask that you all sign our Contributor License Agreement before we can accept your contribution.
0 out of 21 committers have signed the CLA.

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dependabot bot commented on behalf of github Sep 19, 2024

Dependabot attempted to update this pull request, but because the branch dependabot/maven/zeppelin-zengine/org.eclipse.jgit-org.eclipse.jgit-5.13.3.202401111512-r is protected it was unable to do so.

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