Merge branch 'master' into Helmholtz

.github/workflows/build-n-deploy.yml

@@ -0,0 +1,47 @@
+name: Build and Deploy
+
+on:
+  push:
+    branches: [ "master" ]
+
+permissions:
+  contents: write
+
+jobs:
+  build-n-test:
+    uses: ./.github/workflows/build-n-test.yml
+    with:
+      target: E2Etests
+
+  coverage-monitor:
+    uses: ./.github/workflows/coverage-monitor.yml
+
+  deploy-docs:
+    needs: [coverage-monitor, build-n-test]
+    concurrency: ci-${{ github.ref }} # Recommended if you intend to make multiple deployments in quick succession.
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout 🛎️
+        uses: actions/checkout@v3
+
+      - name: Getting Doxygen
+        run: |
+          sudo apt-get install --yes doxygen
+
+      - name: Getting dot
+        run: |
+          sudo apt-get install --yes graphviz
+
+      - name: Creating Documentation
+        run: |
+          doxygen Doxyfile
+
+      - name: Download Coverage Report
+        uses: actions/download-artifact@v4
+        with:
+          path: coverage
+
+      - name: Deploy 🚀
+        uses: JamesIves/github-pages-deploy-action@v4
+        with:
+          folder: .

.github/workflows/build-n-test.yml

@@ -20,7 +20,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
     - name: Configure system
       run: sudo apt-get update

.github/workflows/coverage-monitor.yml

@@ -0,0 +1,66 @@
+name: Coverage Monitor
+
+on:
+  workflow_call:
+
+permissions:
+  contents: write
+
+env:
+  BUILD_TYPE: Coverage
+
+jobs:
+  coverage-monitor:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v3
+      with:
+        python-version: "3.10"
+
+    - name: Configure system
+      run: sudo apt-get update
+
+    - name: Install Eigen3
+      run: sudo apt-get install --yes libeigen3-dev
+
+    - name: Install Gcovr
+      run: sudo pip install gcovr
+
+    - name: Configure CMake
+      # Use a bash shell so we can use the same syntax for environment variable
+      # access regardless of the host operating system
+      shell: bash
+      run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=$BUILD_TYPE -B build
+
+    - name: Build
+      shell: bash
+      run: cmake --build build --config $BUILD_TYPE -j 2 --target unittests
+
+    - name: Run Unittests
+      working-directory: ${{github.workspace}}/build
+      shell: bash
+      run: ctest -C $BUILD_TYPE -L unittests --output-on-failure
+
+    - name: Create Coverage Report
+      working-directory: ${{github.workspace}}/build
+      shell: bash
+      run: |
+        mkdir ../coverage
+        gcovr -r ../ -f ../Bembel --html --html-details --output ../coverage/report.html
+
+    - name: Create Coverage Badge
+      working-directory: ${{github.workspace}}/build
+      shell: bash
+      run: |
+        npm install -g badge-maker
+        gcovr -r ../ -f ../Bembel > coverage.txt
+        badge coverage "$(cat coverage.txt | grep "TOTAL" | awk '{print $(NF-0)}')" :green > ../coverage/coverage.svg
+
+    - name: Upload Report
+      uses: actions/upload-artifact@v4
+      with:
+        name: report
+        path: coverage

Bembel/AnsatzSpace

@@ -13,7 +13,6 @@
 #define BEMBEL_ANSATZSPACE_MODULE_
 
 /**
- * \ingroup Modules
  * \defgroup AnsatzSpace AnsatzSpace
  * \brief The AnsatzSpace module contains the routines managing the discrete
  * space on the surface of the geometry.

Bembel/ClusterTree

@@ -13,7 +13,6 @@
 #define BEMBEL_CLUSTERTREE_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup ClusterTree ClusterTree
  * \brief The ClusterTree module introduces a structure onto the parametric
  * surfaces.

Bembel/DuffyTrick

@@ -13,7 +13,6 @@
 #define BEMBEL_DUFFYTRICK_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup DuffyTrick DuffyTrick
  *  \brief The DuffyTrick module provides quadrature routines for (nearly)
  * singular integrals.

Bembel/Geometry

@@ -13,7 +13,6 @@
 #define BEMBEL_GEOMETRY_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup Geometry Geometry
  *  \brief This module handles all geometry related concerns.
  *
@@ -31,6 +30,8 @@
 #include <memory>
 #include <string>
 #include <vector>
+#include <algorithm>
+#include <ctime>
 
 #include <Eigen/Dense>
 #include <Eigen/Sparse>
@@ -42,6 +43,7 @@
 #include "src/Geometry/Patch.hpp"
 #include "src/Geometry/PatchVector.hpp"
 #include "src/Geometry/GeometryIO.hpp"
+#include "src/Geometry/GeometryIGS.hpp"
 #include "src/Geometry/Geometry.hpp"
 
 #endif  // BEMBEL_GEOMETRY_MODULE_

Bembel/H2Matrix

@@ -13,7 +13,6 @@
 #define BEMBEL_H2MATRIX_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup H2Matrix H2Matrix
  *  \brief The H2Matrix module provides functionality for an efficient
  * compression of the system matrix and reduction of the computational

Bembel/Helmholtz

@@ -13,7 +13,6 @@
 #define BEMBEL_HELMHOLTZOPERATOR_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup Helmholtz Helmholtz
  *  \brief The Helmholtz module provides some specializations to solve Helmholtz
  *problems.

Bembel/HomogenisedLaplace

@@ -0,0 +1,34 @@
+// This file is part of Bembel, the higher order C++ boundary element library.
+//
+// Copyright (C) 2022 see <http://www.bembel.eu>
+//
+// It was written as part of a cooperation of J. Doelz, H. Harbrecht, S. Kurz,
+// M. Multerer, S. Schoeps, and F. Wolf at Technische Universitaet Darmstadt,
+// Universitaet Basel, and Universita della Svizzera italiana, Lugano. This
+// source code is subject to the GNU General Public License version 3 and
+// provided WITHOUT ANY WARRANTY, see <http://www.bembel.eu> for further
+// information.
+
+#ifndef BEMBEL_HOMOGENISEDLAPLACEOPERATOR_MODULE_
+#define BEMBEL_HOMOGENISEDLAPLACEOPERATOR_MODULE_
+
+/**
+ *  \defgroup HomogenisedLaplace HomogenisedLaplace
+ *  \brief The HomogenisedLaplace module provides some specializations to solve
+ *  a homogenised Laplace problem.
+ **/
+
+#include <functional>
+
+#include <Eigen/Dense>
+
+#include "LinearOperator"
+#include "Potential"
+
+#include "src/util/Sphericals.hpp"
+
+#include "src/HomogenisedLaplace/Coefficients.hpp"
+#include "src/HomogenisedLaplace/SingleLayerOperator.hpp"
+#include "src/HomogenisedLaplace/SingleLayerPotential.hpp"
+
+#endif

Bembel/IO

@@ -13,7 +13,6 @@
 #define BEMBEL_VISUALIZE_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup IO IO
  *  \brief The IO module provides input-output functionality.
  **/
@@ -35,6 +34,7 @@
 #include "src/IO/Stopwatch.hpp"
 #include "src/IO/VTKDomainExport.hpp"
 #include "src/IO/VTKSurfaceExport.hpp"
+#include "src/IO/VTKPointExport.hpp"
 #include "src/IO/print2file.hpp"
 
 #endif  // BEMBEL_VISUALIZE_MODULE_

Bembel/Laplace

@@ -13,7 +13,6 @@
 #define BEMBEL_LAPLACEOPERATOR_MODULE_
 
 /**
- *  \ingroup Modules
  *  \defgroup Laplace Laplace
  *  \brief The Laplace module provides some specializations to solve Laplace
  *problems.