feat: add python testing

.github/workflows/tests.yml

@@ -16,3 +16,17 @@ jobs:
       - uses: actions-rs/cargo@v1
         with:
           command: test
+  test-python:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12"]
+    steps:
+    - uses: actions/checkout@v4
+    - run: curl -LsSf https://astral.sh/uv/install.sh | sh
+    - run: source $HOME/.cargo/env
+    - run: uv venv --python ${{ matrix.python-version }}
+    - run: uv pip install ruff pytest
+    - run: uv sync
+    - run: uv run ruff check
+    - run: uv run pytest -v

pyproject.toml

@@ -11,7 +11,7 @@ dependencies = [
     "zstandard>=0.23.0",
 ]
 readme = "README.md"
-requires-python = ">= 3.8"
+requires-python = ">= 3.10"
 
 [build-system]
 requires = ["maturin>=1.2,<2.0"]
@@ -21,9 +21,16 @@ build-backend = "maturin"
 managed = true
 dev-dependencies = [
     "pytest>=8.3.2",
+    "ruff>=0.6.2",
 ]
 
 [tool.maturin]
 python-source = "python"
 module-name = "igwas._lowlevel"
 features = ["pyo3/extension-module"]
+
+[tool.uv]
+dev-dependencies = [
+    "ruff>=0.6.2",
+    "pytest>=8.3.2",
+]

src/util.rs

@@ -308,6 +308,7 @@ mod tests {
             "plink.glm.linear.zst",
             "plink.glm.linear.gz",
             "plink.glm.linear.zst.gz",
+            "here/is/a/path/plink.glm.linear.zst.gz",
         ];
         for path in paths.iter() {
             let result = crate::util::gwas_path_to_phenotype(path);