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tansey-lab

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  1. bayestme bayestme Public

    BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data

    Jupyter Notebook 15 3

  2. pyro_tutorial pyro_tutorial Public

    Python 3

  3. batchie batchie Public

    Python 2

  4. nuc2seg nuc2seg Public

    Whole cell segmentation for single-molecule spatial transcriptomics

    Python 2

  5. pdbal pdbal Public

    Simulation code from the paper "Targeted Active Learning for Probabilistic Models"

    Python 1

  6. juno-nextflow-template juno-nextflow-template Public

    Basic setup for running nextflow on juno

    Shell 1 2

Repositories

Showing 10 of 12 repositories
  • nuc2seg Public

    Whole cell segmentation for single-molecule spatial transcriptomics

    tansey-lab/nuc2seg’s past year of commit activity
    Python 2 0 1 0 Updated Dec 3, 2024
  • bayestme Public

    BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data

    tansey-lab/bayestme’s past year of commit activity
    Jupyter Notebook 15 3 6 1 Updated Nov 21, 2024
  • UnitedPPC Public Forked from reznik-lab/UnitedMet

    A Bayesian probabilistic method to predict drug responses from transcriptomic data

    tansey-lab/UnitedPPC’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Nov 15, 2024
  • nf-rnaseq Public

    A custom NextFlow RNA-seq pipeline for the Tansey lab

    tansey-lab/nf-rnaseq’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 30, 2024
  • batchie Public
    tansey-lab/batchie’s past year of commit activity
    Python 2 MIT 0 0 1 Updated Jul 17, 2024
  • juno-nextflow-template Public

    Basic setup for running nextflow on juno

    tansey-lab/juno-nextflow-template’s past year of commit activity
    Shell 1 2 0 0 Updated Feb 16, 2024
  • sksparse_minimal Public Forked from rgl-epfl/cholespy

    Drop in replacement for `sksparse` that doesn't require conda to install.

    tansey-lab/sksparse_minimal’s past year of commit activity
    C++ 0 BSD-3-Clause 19 0 0 Updated Jan 2, 2024
  • imcode Public

    A model for IMC Data compression/decompression

    tansey-lab/imcode’s past year of commit activity
    Python 0 0 0 0 Updated Dec 11, 2023
  • pyro_tutorial Public
    tansey-lab/pyro_tutorial’s past year of commit activity
    Python 3 0 0 0 Updated Nov 30, 2023
  • imc-tools Public

    Tools for working with IMC data

    tansey-lab/imc-tools’s past year of commit activity
    Python 0 0 0 0 Updated Nov 3, 2023
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