Add BFMD database to repository

steineggerlab · Aug 12, 2024 · 928984b · 928984b
1 parent bde99a7
commit 928984b
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diff --git a/data/structdatabases.sh b/data/structdatabases.sh
@@ -159,6 +159,15 @@ case "${SELECTION}" in
         push_back "${TMP_PATH}/cath50"
         INPUT_TYPE="FOLDSEEK_DB"
     ;;
+    "BFMD")
+        if notExists "${TMP_PATH}/bfmd.tar.gz"; then
+            downloadFile "https://foldseek.steineggerlab.workers.dev/bfmd.tar.gz" "${TMP_PATH}/bfmd.tar.gz"
+            downloadFile "https://foldseek.steineggerlab.workers.dev/bfmd.version" "${TMP_PATH}/version"
+        fi
+        tar xvfz "${TMP_PATH}/bfmd.tar.gz" -C "${TMP_PATH}"
+        push_back "${TMP_PATH}/bfmd"
+        INPUT_TYPE="FOLDSEEK_DB"
+    ;;
     "ProstT5")
         MODEL=prostt5-f16-safetensors.tar.gz
         if [ -n "${PROSTT5_QUANTIZED}" ]; then

diff --git a/src/FoldseekBase.cpp b/src/FoldseekBase.cpp
@@ -432,6 +432,14 @@ std::vector<DatabaseDownload> externalDownloads = {
                 true, Parameters::DBTYPE_AMINO_ACIDS, structdatabases_sh, structdatabases_sh_len,
                 {}
         },
+        {
+                "BFMD",
+                "BFMD Big fantastic multimer database (combined multimers from large prediction projects).",
+                "Kim et al. Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer. bioRxiv (2024)",
+                "https://foldseek.steineggerlab.workers.dev/bfmd.version",
+                true, Parameters::DBTYPE_AMINO_ACIDS, structdatabases_sh, structdatabases_sh_len,
+                {}
+        },
         {
                 "ProstT5",
                 "Protein language model to predict 3Di directly from sequence.",