This repository is for the command line (standalone) version of LocusZoom, an application for creating regional plots from genome-wide association studies built in Python and R.
Documentation for this program is available on our wiki: http://genome.sph.umich.edu/wiki/LocusZoom_Standalone
This version of LocusZoom is no longer under active development. Bug fixes and small updates may be made, though it is unlikely.
A new web-based interactive version of LocusZoom is currently under active development. Please see the locuszoom.js github site for information on using it on your own sites, or see a preview of it in action at locuszoom.org.
| Build | Version | Date | Size |
|---|---|---|---|
| Program + database + LD files | 1.4 | 2017-05-01 | 23G |
| Program + database | 1.4 | 2017-05-01 | 16G |
| Program only | 1.4 | 2017-05-01 | 86K |
| Program + database + LD files | 1.3 | 2014-06-20 | 10G |
| Program + database | 1.3 | 2014-06-20 | 4.3G |
| Program only | 1.3 | 2014-06-20 | 79K |
Database contains required data for LocusZoom to function, though you can skip it if you are already creating your own.
LD files are entirely optional - you can calculate LD instead from your own genotype files (--ld-vcf), or not at all (--no-ld).
A full list of changes for each version can be found in the changelog.
Contact/support options:
- Submit an issue to the repository: https://github.com/statgen/locuszoom-standalone/issues
- Post a message to the Google Group: https://groups.google.com/forum/#!forum/locuszoom