Sort by category #57
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ctb
reviewed
Sep 19, 2024
| @@ -855,6 +855,10 @@ def __init__(self, subparser): | |||
| "--no-y-labels", action="store_true", | |||
| help="disable Y axis labels" | |||
| ) | |||
| subparser.add_argument( | |||
| "--sort-by-category", action="store_true", | |||
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Suggested change
| "--sort-by-category", action="store_true", | |
| "--sort-rows-by-category", action="store_true", |
You could imagine we might want to sort cols by category too ;)
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(so having this be --sort-rows... leaves that option open - not that we need to implement it now)
ctb
reviewed
Sep 19, 2024
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| # optional sorting samples by category | ||
| if args.sort_by_category: | ||
| query_d = manysearch_rows_to_index(rows, column_name='query_name') |
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code looks good! can you move into a separate function?
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Added --sort-by-category to clustermap1. Instead of clustering the rows (samples) we can sort them by a category (treatment, or something else).
@ctb ready for review