GitHub - soccin/BIC-RNAseq: Bioinformatics core RNAseq pipeline

soccin / BIC-RNAseq Public

Bioinformatics core RNAseq pipeline

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Name		Name	Last commit message	Last commit date
Latest commit History 309 Commits
bicrnaseqR		bicrnaseqR
docs		docs
lib		lib
qc		qc
tools		tools
.gitignore		.gitignore
FusionMetaCaller.R		FusionMetaCaller.R
MergeFusion		MergeFusion
RunDE.R		RunDE.R
RunDE_inputQC.R		RunDE_inputQC.R
gsea-cli.sh		gsea-cli.sh
jobPost		jobPost
jobSync		jobSync
makefile		makefile
mergeCollectRnaSeqHistograms.py		mergeCollectRnaSeqHistograms.py
mergeCutAdaptStats.py		mergeCutAdaptStats.py
mergeKallistoAbundance.py		mergeKallistoAbundance.py
mergePicardMetrics.pl		mergePicardMetrics.pl
mergeRSEMcounts.py		mergeRSEMcounts.py
packageInfo.R		packageInfo.R
prepGEO.pl		prepGEO.pl
rnaseq_count_matrix.py		rnaseq_count_matrix.py
rnaseq_pipeline.pl		rnaseq_pipeline.pl
rnaseq_pipeline_config.txt		rnaseq_pipeline_config.txt
run_DESeq_wrapper.pl		run_DESeq_wrapper.pl
starProcessing.pl		starProcessing.pl
vennDiagram.R		vennDiagram.R