Version bump

Signed-off-by: Douwe Schulte <d.schulte@uu.nl>
snijderlab · Nov 14, 2023 · 6d3b540 · 6d3b540
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,7 @@ All releases can also be found here: https://github.com/snijderlab/stitch/releas
 # Upcoming Release
 
 * Added loading of sequences from mmCIF files, for ModelAngelo (#207, #217)
+* Added loading of sequences from Peaks 11 and Peaks Ab
 * Added loading of sequences from Casanovo, pNovo, and MaxNovo (#192)
 * Added loading of spectra from Casanovo, pNovo, and MaxNovo (#195)
 * Added I/L disambiguation based on satellite ions (#193, #216, #218)
@@ -21,6 +22,7 @@ All releases can also be found here: https://github.com/snijderlab/stitch/releas
 * Fixed leading insertions in reads placement displayed in a different colour, for more clarity in the alignment
 * Fixed bugs (#222, #230)
 * Performance improvements
+* Many more small fixes and improvements
 
 Note
 * The benchmarks show a mostly very slightly positive result, with the caveat that I/L disambiguation is not automatically benchmarked yet because raw files are so big.

diff --git a/CITATION.cff b/CITATION.cff
@@ -1,5 +1,5 @@
 title: Stitch
-version: 1.4.0
+version: 1.5.0-rc.1
 abstract: Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
 authors:
   - affiliation: Utrecht University

diff --git a/batchfiles/basic.txt b/batchfiles/basic.txt
@@ -1,5 +1,5 @@
 -Run Info---------------
-Version	: 1.4
+Version	: 1.5
 Runname	: Basic run
 
 Input ->

diff --git a/batchfiles/modelangelo.txt b/batchfiles/modelangelo.txt
@@ -1,5 +1,5 @@
 -Run Info---------------
-Version         : 1.4
+Version         : 1.5
 
 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps
 Input ->

diff --git a/batchfiles/modelangelo_recombined.txt b/batchfiles/modelangelo_recombined.txt
@@ -1,5 +1,5 @@
 -Run Info---------------
-Version         : 1.4
+Version         : 1.5
 
 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps
 Input ->

diff --git a/batchfiles/monoclonal.txt b/batchfiles/monoclonal.txt
@@ -1,5 +1,5 @@
 -Run Info---------------
-Version         : 1.4
+Version         : 1.5
 Runname         : Monoclonal Herceptin
 
 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps

diff --git a/batchfiles/polyclonal.txt b/batchfiles/polyclonal.txt
@@ -1,5 +1,5 @@
 -Run Info---------------
-Version	: 1.4
+Version	: 1.5
 Runname	: COVID 19 patient 14
 
 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps

diff --git a/batchfiles/test_ma.txt b/batchfiles/test_ma.txt
@@ -1,5 +1,5 @@
 -Run Info---------------
-Version         : 1.4
+Version         : 1.5
 
 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps
 Input ->

diff --git a/stitch/stitch.csproj b/stitch/stitch.csproj
@@ -4,7 +4,7 @@
     <OutputType>Exe</OutputType>
     <TargetFramework>net7.0</TargetFramework>
     <CodeAnalysisRuleSet>StandardRuleset.ruleset</CodeAnalysisRuleSet>
-    <Version>1.4.0</Version>
+    <Version>1.5.0-rc.1</Version>
   </PropertyGroup>
    <PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|AnyCPU' ">
     <DebugSymbols>true</DebugSymbols>