update tests

snakemake-workflows · Jul 5, 2024 · 445ed65 · 445ed65
1 parent 17c1125
commit 445ed65
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Showing 8 changed files with 16 additions and 4 deletions.
diff --git a/.test/config-tumor_normal/config.yaml b/.test/config-tumor_normal/config.yaml
@@ -9,14 +9,17 @@ ref:
   # Ensembl species name
   species: saccharomyces_cerevisiae
   # Ensembl release
-  release: 100
+  release: 111
   # Genome build
   build: R64-1-1
 
 # If calc_consensus_reads is activated duplicates will be merged
 remove_duplicates:
   activate: false
 
+mutational_signatures:
+  activate: false
+
 calling:
   delly:
     activate: true

diff --git a/.test/config-tumor_normal_ffpe/config.yaml b/.test/config-tumor_normal_ffpe/config.yaml
@@ -9,14 +9,17 @@ ref:
   # Ensembl species name
   species: saccharomyces_cerevisiae
   # Ensembl release
-  release: 100
+  release: 111
   # Genome build
   build: R64-1-1
 
 # If calc_consensus_reads is activated duplicates will be merged
 remove_duplicates:
   activate: false
 
+mutational_signatures:
+  activate: false
+
 calling:
   delly:
     activate: true

diff --git a/.test/config-tumor_only/config.yaml b/.test/config-tumor_only/config.yaml
@@ -9,14 +9,17 @@ ref:
   # Ensembl species name
   species: saccharomyces_cerevisiae
   # Ensembl release
-  release: 100
+  release: 111
   # Genome build
   build: R64-1-1
 
 # If calc_consensus_reads is activated duplicates will be merged
 remove_duplicates:
   activate: false
 
+mutational_signatures:
+  activate: false
+
 calling:
   delly:
     activate: true

diff --git a/.test/config-tumor_only_ffpe/config.yaml b/.test/config-tumor_only_ffpe/config.yaml
@@ -9,14 +9,17 @@ ref:
   # Ensembl species name
   species: saccharomyces_cerevisiae
   # Ensembl release
-  release: 100
+  release: 111
   # Genome build
   build: R64-1-1
 
 # If calc_consensus_reads is activated duplicates will be merged
 remove_duplicates:
   activate: false
 
+mutational_signatures:
+  activate: false
+
 calling:
   delly:
     activate: true

diff --git a/.test/data/alphamissense_scores.tsv.gz b/.test/data/alphamissense_scores.tsv.gz
diff --git a/.test/data/alphamissense_scores.tsv.gz.tbi b/.test/data/alphamissense_scores.tsv.gz.tbi
diff --git a/.test/data/spliceai_scores.raw.snv.hg38.vcf.gz b/.test/data/spliceai_scores.raw.snv.hg38.vcf.gz
diff --git a/.test/data/spliceai_scores.raw.snv.hg38.vcf.gz.tbi b/.test/data/spliceai_scores.raw.snv.hg38.vcf.gz.tbi