adds deeptools docker iamge

sib-swiss · Apr 8, 2024 · 45cc2ab · 45cc2ab
1 parent 145d6ea
commit 45cc2ab
Showing 1 changed file with 9 additions and 8 deletions.
diff --git a/Docker/vscode/environment.yml b/Docker/vscode/environment.yml
@@ -5,17 +5,18 @@ channels:
 dependencies:
   - pip
   - samtools>=1.10 
-  - bwa=0.7.17 
-  - fastqc=0.11.8 
+  - bwa>=0.7.17 
+  - fastqc>=0.11.8 
   - sra-tools>=3 
-  - cutadapt=3.4 
-  - bowtie2=2.4.2 
-  - hisat2=2.2.1 
-  - subread=2.0.1
+  - cutadapt>=3.4 
+  - bowtie2>=2.4.2 
+  - hisat2>=2.2.1 
+  - subread>=2.0.1
   - entrez-direct>=15
-  - minimap2=2.18
+  - deeptools>=3.5
+  - minimap2>=2.18
   - gatk4
-  - freebayes=1.3.6
+  - freebayes>=1.3.6
   - multiqc
   - fastp
   - pip: