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sgkit-dev

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sgkit sgkit Public

Scalable genetics toolkit

Python 235 32
bio2zarr bio2zarr Public

Convert bioinformatics file formats to Zarr

Python 28 7
vcf-zarr-spec vcf-zarr-spec Public

VCF Zarr Specification

12 2
sgkit-requirements sgkit-requirements Public

Repo for collecting requirements.

Jupyter Notebook 6 1
sgkit-publication sgkit-publication Public

Sgkit publication repository

TeX 5 5
vcztools vcztools Public

Partial reimplementation of bcftools for VCF Zarr

Python 4 3

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Showing 10 of 14 repositories

vcf-zarr-publication Public
Manuscript and associated scripts for vcf-zarr publication

sgkit-dev/vcf-zarr-publication’s past year of commit activity

Jupyter Notebook 2 8 10 1 Updated Nov 21, 2024
vcztools Public
Partial reimplementation of bcftools for VCF Zarr

sgkit-dev/vcztools’s past year of commit activity

Python 4 Apache-2.0 3 19 2 Updated Nov 19, 2024
bio2zarr Public
Convert bioinformatics file formats to Zarr

sgkit-dev/bio2zarr’s past year of commit activity

Python 28 Apache-2.0 7 24 (3 issues need help) 4 Updated Nov 11, 2024
sgkit Public
Scalable genetics toolkit

sgkit-dev/sgkit’s past year of commit activity

Python 235 Apache-2.0 32 216 (2 issues need help) 9 Updated Nov 5, 2024
sgkit-benchmarks-asv Public

sgkit-dev/sgkit-benchmarks-asv’s past year of commit activity

JavaScript 0 1 0 0 Updated Nov 5, 2024
vcf-zarr-spec Public
VCF Zarr Specification

sgkit-dev/vcf-zarr-spec’s past year of commit activity

12 Apache-2.0 2 23 0 Updated Jul 29, 2024
hypothesis-vcf Public
Hypothesis strategy for generating VCF

sgkit-dev/hypothesis-vcf’s past year of commit activity

Python 1 Apache-2.0 0 0 0 Updated Jul 18, 2024
sgkit-publication Public
Sgkit publication repository

sgkit-dev/sgkit-publication’s past year of commit activity

TeX 5 5 19 0 Updated Mar 6, 2024
sgkit-publication-backup Public Forked from sgkit-dev/sgkit-publication
Backup of sgkit publication repository, original manubot version

sgkit-dev/sgkit-publication-backup’s past year of commit activity

HTML 0 5 0 0 Updated Feb 27, 2023
sgkit-bgen Public archive
NOW ARCHIVED! BGEN IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

sgkit-dev/sgkit-bgen’s past year of commit activity

Python 0 Apache-2.0 3 12 0 Updated Oct 6, 2020

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