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Fix zlib support for static macos build #225

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merged 1 commit into from
Dec 20, 2023
Merged

Fix zlib support for static macos build #225

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4 changes: 1 addition & 3 deletions src/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -34,12 +34,12 @@ option (LAMBDA_WITH_BIFM "Include codepaths for bidirectional indexes." OFF)

if (LAMBDA_STATIC_BUILD)
add_definitions (-DLAMBDA_STATIC_BUILD=1)
set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
# apple does not support fully static builds, but at least libgcc and libstdc++
if (APPLE)
set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -static-libgcc -static-libstdc++")
message (WARNING "WARNING: Builds on Mac are never fully static.")
else (APPLE)
set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -static")
endif (APPLE)
# on linux cmake adds -rdynamic automatically which clang can't handle in static builds
Expand All @@ -65,7 +65,6 @@ message(STATUS "Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF
# Search SeqAn and select dependencies.
find_package(OpenMP QUIET)
find_package(ZLIB QUIET)
find_package(BZip2 QUIET)
find_package(SeqAn QUIET REQUIRED CONFIG)

# BIO
Expand All @@ -85,7 +84,6 @@ add_subdirectory(../submodules/fmindex-collection fmindex-collection)
message(STATUS "These dependencies were found:")
message( " BIOCPP-CORE ${BIOCPP_CORE_FOUND} ${BIOCPP_CORE_VERSION}")
message( " BIOCPP-IO ${BIOCPP_IO_FOUND} ${BIOCPP_IO_VERSION}")
message( " BZIP2 ${BZIP2_FOUND} ${BZIP2_VERSION_STRING}")
message( " CEREAL ${CEREAL_FOUND} ${CEREAL_VERSION}")
message( " OPENMP ${OPENMP_FOUND} ${OpenMP_CXX_FLAGS}")
message( " SEQAN ${SEQAN_FOUND} ${SEQAN_VERSION_STRING}")
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