v43: source code

R code to reproduce figures in Vaccari M. et al., 2018

List of figures:

Fig. S9e

Fig. S9e

Fig. S9e: R code [MD], Input file [CSV]

Supplemental material:

Microarray analysis

code:

• preprocessing: [MD]

input:

• non-normalized·matrix: [CSV]
• arrays/samples annotation: [CSV]
• features annotation: [TSV]

output:

• non-normalized ExpressionSet: [RDA]
• quantile normalized ExpressionSet: [RDA]
• pre-vaccination-substracted ExpressionSet: [RDA]
• MArrayLM list: [RDA]