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Update ingest example. Fixes AttributeError: 'Ingest' object has no attribute '_pca_use_hvg' #3075

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Update ingest example. Fixes AttributeError: 'Ingest' object has no attribute '_pca_use_hvg' #3075

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update ingest example
siebrenf May 22, 2024
3a84581
Merge branch 'main' into patch-1
ilan-gold May 28, 2024
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1 change: 1 addition & 0 deletions scanpy/tools/_ingest.py
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Original file line number Diff line number Diff line change
Expand Up @@ -116,6 +116,7 @@ def ingest(
Call sequence:

>>> import scanpy as sc
>>> sc.pp.pca(adata_ref)
>>> sc.pp.neighbors(adata_ref)
>>> sc.tl.umap(adata_ref)
>>> sc.tl.ingest(adata, adata_ref, obs='cell_type')
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