Backport PR #1747 on branch 0.11.x (Add PYI lints) (#1748)

Co-authored-by: Philipp A <flying-sheep@web.de>
scverse · Nov 8, 2024 · 3aed0b6 · 3aed0b6
1 parent 6ae9de8
commit 3aed0b6
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Showing 3 changed files with 5 additions and 3 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -181,6 +181,7 @@ select = [
     "ICN", # Follow import conventions
     "PTH", # Pathlib instead of os.path
     "PT",  # Pytest conventions
+    "PYI", # Typing
 ]
 ignore = [
     # line too long -> we accept long comment lines; formatter gets rid of long code lines

diff --git a/src/anndata/_core/anndata.py b/src/anndata/_core/anndata.py
@@ -1169,9 +1169,7 @@ def _inplace_subset_obs(self, index: Index1D):
         self._init_as_actual(adata_subset)
 
     # TODO: Update, possibly remove
-    def __setitem__(
-        self, index: Index, val: int | float | np.ndarray | sparse.spmatrix
-    ):
+    def __setitem__(self, index: Index, val: float | np.ndarray | sparse.spmatrix):
         if self.is_view:
             raise ValueError("Object is view and cannot be accessed with `[]`.")
         obs, var = self._normalize_indices(index)

diff --git a/src/anndata/_types.py b/src/anndata/_types.py
@@ -25,6 +25,9 @@
     "ArrayStorageType",
     "GroupStorageType",
     "StorageType",
+    "_ReadInternal",
+    "_ReadDaskInternal",
+    "_WriteInternal",
 ]
 
 ArrayStorageType: TypeAlias = ZarrArray | H5Array