Merge pull request #114 from scipp/transformations

Expose NeXus transformation chains in workflow steps

pyproject.toml

@@ -32,7 +32,7 @@ requires-python = ">=3.10"
 dependencies = [
     "sciline>=24.06.2",
     "scipp>=24.02.0",
-    "scippnexus>=24.03.0",
+    "scippnexus>=24.10.0",
 ]
 
 dynamic = ["version"]

requirements/base.in

@@ -4,4 +4,4 @@
 # The following was generated by 'tox -e deps', DO NOT EDIT MANUALLY!
 sciline>=24.06.2
 scipp>=24.02.0
-scippnexus>=24.03.0
+scippnexus>=24.10.0

requirements/base.txt

@@ -1,4 +1,4 @@
-# SHA1:01b3a1b355da9250816f108088c3e93e58323bf7
+# SHA1:f3f405557d50cce037f6d681dfb1c5c13f5bef49
 #
 # This file is autogenerated by pip-compile-multi
 # To update, run:
@@ -7,24 +7,24 @@
 #
 cyclebane==24.6.0
     # via sciline
-h5py==3.11.0
+h5py==3.12.1
     # via scippnexus
 networkx==3.3
     # via cyclebane
-numpy==2.1.0
+numpy==2.1.2
     # via
     #   h5py
     #   scipp
     #   scipy
 python-dateutil==2.9.0.post0
     # via scippnexus
-sciline==24.6.2
+sciline==24.6.3
     # via -r base.in
 scipp==24.9.1
     # via
     #   -r base.in
     #   scippnexus
-scippnexus==24.8.1
+scippnexus==24.10.0
     # via -r base.in
 scipy==1.14.1
     # via scippnexus

requirements/basetest.txt

@@ -7,7 +7,7 @@
 #
 asttokens==2.4.1
     # via stack-data
-certifi==2024.7.4
+certifi==2024.8.30
     # via requests
 charset-normalizer==3.3.2
     # via requests
@@ -19,13 +19,13 @@ exceptiongroup==1.2.2
     # via
     #   ipython
     #   pytest
-executing==2.0.1
+executing==2.1.0
     # via stack-data
-idna==3.8
+idna==3.10
     # via requests
 iniconfig==2.0.0
     # via pytest
-ipython==8.26.0
+ipython==8.28.0
     # via ipywidgets
 ipywidgets==8.1.5
     # via -r basetest.in
@@ -43,29 +43,29 @@ parso==0.8.4
     # via jedi
 pexpect==4.9.0
     # via ipython
-platformdirs==4.2.2
+platformdirs==4.3.6
     # via pooch
 pluggy==1.5.0
     # via pytest
 pooch==1.8.2
     # via -r basetest.in
-prompt-toolkit==3.0.47
+prompt-toolkit==3.0.48
     # via ipython
 ptyprocess==0.7.0
     # via pexpect
 pure-eval==0.2.3
     # via stack-data
 pygments==2.18.0
     # via ipython
-pytest==8.3.2
+pytest==8.3.3
     # via -r basetest.in
 requests==2.32.3
     # via pooch
 six==1.16.0
     # via asttokens
 stack-data==0.6.3
     # via ipython
-tomli==2.0.1
+tomli==2.0.2
     # via pytest
 traitlets==5.14.3
     # via
@@ -75,7 +75,7 @@ traitlets==5.14.3
     #   matplotlib-inline
 typing-extensions==4.12.2
     # via ipython
-urllib3==2.2.2
+urllib3==2.2.3
     # via requests
 wcwidth==0.2.13
     # via prompt-toolkit

requirements/ci.txt

@@ -7,7 +7,7 @@
 #
 cachetools==5.5.0
     # via tox
-certifi==2024.7.4
+certifi==2024.8.30
     # via requests
 chardet==5.2.0
     # via tox
@@ -17,40 +17,42 @@ colorama==0.4.6
     # via tox
 distlib==0.3.8
     # via virtualenv
-filelock==3.15.4
+filelock==3.16.1
     # via
     #   tox
     #   virtualenv
 gitdb==4.0.11
     # via gitpython
 gitpython==3.1.43
     # via -r ci.in
-idna==3.8
+idna==3.10
     # via requests
 packaging==24.1
     # via
     #   -r ci.in
     #   pyproject-api
     #   tox
-platformdirs==4.2.2
+platformdirs==4.3.6
     # via
     #   tox
     #   virtualenv
 pluggy==1.5.0
     # via tox
-pyproject-api==1.7.1
+pyproject-api==1.8.0
     # via tox
 requests==2.32.3
     # via -r ci.in
 smmap==5.0.1
     # via gitdb
-tomli==2.0.1
+tomli==2.0.2
     # via
     #   pyproject-api
     #   tox
-tox==4.18.0
+tox==4.21.2
     # via -r ci.in
-urllib3==2.2.2
+typing-extensions==4.12.2
+    # via tox
+urllib3==2.2.3
     # via requests
-virtualenv==20.26.3
+virtualenv==20.26.6
     # via tox

requirements/dev.txt

@@ -14,7 +14,7 @@
 -r wheels.txt
 annotated-types==0.7.0
     # via pydantic
-anyio==4.4.0
+anyio==4.6.0
     # via
     #   httpx
     #   jupyter-server
@@ -26,7 +26,7 @@ arrow==1.3.0
     # via isoduration
 async-lru==2.0.4
     # via jupyterlab
-cffi==1.17.0
+cffi==1.17.1
     # via argon2-cffi-bindings
 click==8.1.7
     # via
@@ -42,9 +42,9 @@ funcy==2.0
     # via copier
 h11==0.14.0
     # via httpcore
-httpcore==1.0.5
+httpcore==1.0.6
     # via httpx
-httpx==0.27.0
+httpx==0.27.2
     # via jupyterlab
 isoduration==20.11.0
     # via jsonschema
@@ -71,7 +71,7 @@ jupyter-server==2.14.2
     #   notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
-jupyterlab==4.2.4
+jupyterlab==4.2.5
     # via -r dev.in
 jupyterlab-server==2.27.3
     # via jupyterlab
@@ -85,15 +85,15 @@ pip-compile-multi==2.6.4
     # via -r dev.in
 pip-tools==7.4.1
     # via pip-compile-multi
-plumbum==1.8.3
+plumbum==1.9.0
     # via copier
-prometheus-client==0.20.0
+prometheus-client==0.21.0
     # via jupyter-server
 pycparser==2.22
     # via cffi
-pydantic==2.8.2
+pydantic==2.9.2
     # via copier
-pydantic-core==2.20.1
+pydantic-core==2.23.4
     # via pydantic
 python-json-logger==2.0.7
     # via jupyter-events
@@ -119,7 +119,7 @@ terminado==0.18.1
     #   jupyter-server-terminals
 toposort==1.10
     # via pip-compile-multi
-types-python-dateutil==2.9.0.20240821
+types-python-dateutil==2.9.0.20241003
     # via arrow
 uri-template==1.3.0
     # via jsonschema

requirements/docs.txt

@@ -26,15 +26,15 @@ beautifulsoup4==4.12.3
     #   pydata-sphinx-theme
 bleach==6.1.0
     # via nbconvert
-certifi==2024.7.4
+certifi==2024.8.30
     # via requests
 charset-normalizer==3.3.2
     # via requests
 comm==0.2.2
     # via
     #   ipykernel
     #   ipywidgets
-debugpy==1.8.5
+debugpy==1.8.6
     # via ipykernel
 decorator==5.1.1
     # via ipython
@@ -48,19 +48,19 @@ docutils==0.21.2
     #   sphinx
 exceptiongroup==1.2.2
     # via ipython
-executing==2.0.1
+executing==2.1.0
     # via stack-data
 fastjsonschema==2.20.0
     # via nbformat
 graphviz==0.20.3
     # via -r docs.in
-idna==3.8
+idna==3.10
     # via requests
 imagesize==1.4.1
     # via sphinx
 ipykernel==6.29.5
     # via -r docs.in
-ipython==8.26.0
+ipython==8.28.0
     # via
     #   -r docs.in
     #   ipykernel
@@ -79,7 +79,7 @@ jsonschema==4.23.0
     # via nbformat
 jsonschema-specifications==2023.12.1
     # via jsonschema
-jupyter-client==8.6.2
+jupyter-client==8.6.3
     # via
     #   ipykernel
     #   nbclient
@@ -106,7 +106,7 @@ matplotlib-inline==0.1.7
     # via
     #   ipykernel
     #   ipython
-mdit-py-plugins==0.4.1
+mdit-py-plugins==0.4.2
     # via myst-parser
 mdurl==0.1.2
     # via markdown-it-py
@@ -139,9 +139,9 @@ parso==0.8.4
     # via jedi
 pexpect==4.9.0
     # via ipython
-platformdirs==4.2.2
+platformdirs==4.3.6
     # via jupyter-core
-prompt-toolkit==3.0.47
+prompt-toolkit==3.0.48
     # via ipython
 psutil==6.0.0
     # via ipykernel
@@ -187,7 +187,7 @@ sphinx==8.0.2
     #   sphinx-autodoc-typehints
     #   sphinx-copybutton
     #   sphinx-design
-sphinx-autodoc-typehints==2.2.3
+sphinx-autodoc-typehints==2.4.4
     # via -r docs.in
 sphinx-copybutton==0.5.2
     # via -r docs.in
@@ -209,7 +209,7 @@ stack-data==0.6.3
     # via ipython
 tinycss2==1.3.0
     # via nbconvert
-tomli==2.0.1
+tomli==2.0.2
     # via sphinx
 tornado==6.4.1
     # via
@@ -232,7 +232,7 @@ typing-extensions==4.12.2
     # via
     #   ipython
     #   pydata-sphinx-theme
-urllib3==2.2.2
+urllib3==2.2.3
     # via requests
 wcwidth==0.2.13
     # via prompt-toolkit

requirements/nightly.txt

@@ -10,11 +10,11 @@ cyclebane @ git+https://github.com/scipp/cyclebane@main
     # via
     #   -r nightly.in
     #   sciline
-h5py==3.11.0
+h5py==3.12.1
     # via scippnexus
 networkx==3.3
     # via cyclebane
-numpy==2.1.0
+numpy==2.1.2
     # via
     #   h5py
     #   scipp

requirements/static.txt

@@ -9,17 +9,17 @@ cfgv==3.4.0
     # via pre-commit
 distlib==0.3.8
     # via virtualenv
-filelock==3.15.4
+filelock==3.16.1
     # via virtualenv
-identify==2.6.0
+identify==2.6.1
     # via pre-commit
 nodeenv==1.9.1
     # via pre-commit
-platformdirs==4.2.2
+platformdirs==4.3.6
     # via virtualenv
-pre-commit==3.8.0
+pre-commit==4.0.0
     # via -r static.in
 pyyaml==6.0.2
     # via pre-commit
-virtualenv==20.26.3
+virtualenv==20.26.6
     # via pre-commit

requirements/wheels.txt

@@ -5,11 +5,11 @@
 #
 #    pip-compile-multi
 #
-build==1.2.1
+build==1.2.2.post1
     # via -r wheels.in
 packaging==24.1
     # via build
-pyproject-hooks==1.1.0
+pyproject-hooks==1.2.0
     # via build
-tomli==2.0.1
+tomli==2.0.2
     # via build