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ci: use BioC 3.20

ci: use BioC 3.20 #2

Triggered via push July 29, 2024 09:11
Status Failure
Total duration 16m 32s
Artifacts 1

check-bioc.yml

on: push
Matrix: build-check
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6 errors and 33 warnings
macOS-latest (devel)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (devel)
Process completed with exit code 1.
windows-latest (devel)
Packages suggested but not available: 'faahKO', 'xcms'
windows-latest (devel)
Packages suggested but not available: 'faahKO', 'xcms'
windows-latest (devel)
R CMD check found ERRORs
windows-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (devel)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (devel)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (devel)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (devel)
harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz
ubuntu-latest (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-latest (devel)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
windows-latest (devel)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/books/bin/windows/contrib/4.5:
windows-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
windows-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/books/bin/windows/contrib/4.5:
windows-latest (devel)
unknown option '--force-biarch'
windows-latest (devel)
unknown option '--force-biarch'
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/bin/windows/contrib/4.5:

Artifacts

Produced during runtime
Name Size
Windows-biocversion-devel-r-devel-results Expired
33.6 KB