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@rat-genome-database

Rat Genome Database

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  1. rgd-core-library rgd-core-library Public

    Domain layer and shared components

    Java

  2. rgd-web-application rgd-web-application Public

    Code used by the RGD web site and tools

    JavaScript 1

  3. rgd-web-services rgd-web-services Public

    Swagger implementation

    Java

  4. rgd-annotation-files rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

Repositories

Showing 10 of 143 repositories
  • rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

    rat-genome-database/rgd-annotation-files’s past year of commit activity
    0 GPL-3.0 0 1 0 Updated Nov 23, 2024
  • ftp-file-extracts-pipeline Public

    Generate weekly files for RGD FTP site

    rat-genome-database/ftp-file-extracts-pipeline’s past year of commit activity
    Java 1 GPL-3.0 1 0 0 Updated Nov 23, 2024
  • gff3-pipeline Public

    Creates gff3 files to be loaded into RGD JBrowse instance.

    rat-genome-database/gff3-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 22, 2024
  • expression-tpm-pipeline Public

    load the TPM data being generated for GEO expression samples

    rat-genome-database/expression-tpm-pipeline’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 21, 2024
  • phenotype-annotation-pipeline Public

    Phenotype annotation pipeline, for mouse and human genes.

    rat-genome-database/phenotype-annotation-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • clinvar-pipeline Public

    Loads variants from ClinVar into RGD database. Creates disease annotations to variants and also for genes, based on orthology.

    rat-genome-database/clinvar-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • XCO-Experimental-Condition-Ontology Public

    Experimental Condition Ontology maintained by RGD

    rat-genome-database/XCO-Experimental-Condition-Ontology’s past year of commit activity
    2 2 0 1 Updated Nov 19, 2024
  • cellosaurus-pipeline Public

    Pipeline to import cell lines from cellosaurus at Expasy

    rat-genome-database/cellosaurus-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • rgd-core-library Public

    Domain layer and shared components

    rat-genome-database/rgd-core-library’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • variant-load-pipeline Public

    Load rat strain data from VCF files into RGD database and precomputes data for use by Variant Visualizer tool

    rat-genome-database/variant-load-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 18, 2024
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