Deactivate run shell to fix cleanup error in micromamba #718
Workflow file for this run
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| name: Test pysteps | |
| on: | |
| # Triggers the workflow on push or pull request events to the master branch | |
| push: | |
| branches: | |
| - master | |
| - pysteps-v2 | |
| pull_request: | |
| branches: | |
| - master | |
| - pysteps-v2 | |
| jobs: | |
| unit_tests: | |
| name: Unit Tests (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ "ubuntu-latest", "macos-latest", "windows-latest" ] | |
| python-version: ["3.8", "3.10"] | |
| max-parallel: 6 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install mamba and create environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/ci_test_env.yml | |
| environment-name: test_environment | |
| generate-run-shell: false | |
| create-args: python=${{ matrix.python-version }} | |
| - name: Install pygrib (not win) | |
| if: matrix.os != 'windows-latest' | |
| run: mamba install --quiet pygrib | |
| - name: Install pysteps for MacOS | |
| if: matrix.os == 'macos-latest' | |
| working-directory: ${{github.workspace}} | |
| env: | |
| CC: gcc-9 | |
| CXX: g++-9 | |
| CXX1X: g++-9 | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| run: | | |
| brew update-reset | |
| brew update | |
| gcc-9 --version || brew install gcc@9 | |
| pip install . | |
| - name: Install pysteps | |
| if: matrix.os != 'macos-latest' | |
| working-directory: ${{github.workspace}} | |
| run: pip install . | |
| - name: Download pysteps data | |
| env: | |
| PYSTEPS_DATA_PATH: ${{github.workspace}}/pysteps_data | |
| working-directory: ${{github.workspace}}/ci | |
| run: python fetch_pysteps_data.py | |
| - name: Check imports | |
| working-directory: ${{github.workspace}}/pysteps_data | |
| run: | | |
| python --version | |
| python -c "import pysteps; print(pysteps.__file__)" | |
| python -c "from pysteps import motion" | |
| python -c "from pysteps.motion import vet" | |
| python -c "from pysteps.motion import proesmans" | |
| - name: Run tests and coverage report | |
| working-directory: ${{github.workspace}}/pysteps_data | |
| env: | |
| PYSTEPSRC: ${{github.workspace}}/pysteps_data/pystepsrc | |
| run: pytest --pyargs pysteps --cov=pysteps --cov-report=xml --cov-report=term -ra | |
| - name: Upload coverage to Codecov (Linux only) | |
| if: matrix.os == 'ubuntu-latest' | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ${{github.workspace}}/pysteps_data/coverage.xml | |
| flags: unit_tests | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: true | |
| verbose: true |