Framework for simple experimentation with radiomics features

Streamlit Share	Docker	Python
Demo	docker run -p 8501:8501 -v <your_data_dir>:/data -it pwoznicki/autorad:latest	pip install -U autorad

 

Download desktop app (experimental)

Windows 10	MacOS 11 (x64)	Ubuntu 20.04

Installation from source

Caution

Currently only version 3.10 (tested 3.10.14) is working when installing autorad==0.2.6 from source or pip.

git clone https://github.com/pwoznicki/AutoRadiomics.git
cd AutoRadiomics
pip install -e .

Getting started

Tutorials can be found in the examples directory:

• Binary classification

Documentation is available at autoradiomics.readthedocs.io.

Web application

To use the application, make sure you have its dependencies installed:

pip install -e ".[app]"

Caution

Currently only version 3.10 (tested 3.10.14) is working when installing autorad==0.2.6 from source or pip.

The application can be started from the root directory with:

streamlit run autorad/webapp/app.py

By default it willl run at http://localhost:8501/.

For more information about AutoRadiomics, please read our paper:

  AutoRadiomics: A Framework for Reproducible Radiomics Research;
  P Woznicki, F Laqua, T Bley, B Baeßler;
  Frontiers in Radiology, 22

Please cite it if you're using the framework for your research.