Salmonella biofilm formation prediction

Workflow DAG

Running the pipeline

• Edit the config file in the indicated places
• Install snakemake. A bare conda/mamba environment is recommended (ie., created with mamba craete -c conda-forge -c bioconda -n snakemake snakemake)
• Run the pipeline with snakemake --use-conda -c

To Dos

• Feature selection
• Add tree building to pipeline