mouse genome added

platforma-open · Nov 11, 2024 · 7857b14 · 7857b14
1 parent ed1c714
commit 7857b14
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Showing 2 changed files with 15 additions and 0 deletions.
diff --git a/genomeFiles/genomeFileUrls.json b/genomeFiles/genomeFileUrls.json
@@ -5,5 +5,12 @@
     "genomeSAindexNbases": 10,
     "genome_url": "https://ftp.ensembl.org/pub/release-113/fasta/saccharomyces_cerevisiae/dna/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz",
     "gtf_url": "https://ftp.ensembl.org/pub/release-113/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.R64-1-1.113.gtf.gz"
+  },
+  "Mus_musculus": {
+    "assembly_version": "GRCm39",
+    "read_length": 100,
+    "genomeSAindexNbases": 14,
+    "genome_url": "https://ftp.ensembl.org/pub/release-113/fasta/mus_musculus/dna/Mus_musculus.GRCm39.dna.primary_assembly.fa.gz",
+    "gtf_url": "https://ftp.ensembl.org/pub/release-113/gtf/mus_musculus/Mus_musculus.GRCm39.113.gtf.gz"
   }
 }
diff --git a/genomeFiles/package.json b/genomeFiles/package.json
@@ -22,6 +22,14 @@
           "registry": "platforma-open",
           "root": "./indexed_genome/Saccharomyces_cerevisiae"
         }
+      },
+      "mus-musculus": {
+        "asset": {
+          "type": "asset",
+          "registry": "platforma-open",
+          "version": "1.0.0",
+          "root": "./indexed_genome/Mus_musculus"
+        }
       }
     }
   },