fix

platforma-open · Nov 10, 2024 · 33207e8 · 33207e8
1 parent e1f2300
commit 33207e8
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diff --git a/genomeFiles/package.json b/genomeFiles/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.star-read-mapping.genome-asset",
-  "version": "1.0.4",
+  "version": "1.0.5",
   "description": "STAR indexed genome references",
   "scripts": {
     "build-skip": "echo 'This is fake build script for CI optimization'",

diff --git a/genomeFiles/run_star_index.sh b/genomeFiles/run_star_index.sh
@@ -93,6 +93,8 @@ echo "Generating genome index with sjdbOverhang=${SJDB_OVERHANG} and genomeSAind
 # Cleanup: Remove intermediate files
 rm genome.fa
 rm -rf _STARtmp/
+# Rename GTF to standard name
+mv "${GTF_FILENAME}" annotations.gtf
 
 # echo "Output files: ${GTF_FILENAME} and ${TAR_FILENAME}"
 echo "Genome index generation and packaging complete."