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Merge pull request #1 from platforma-open/enable-ci
feat: enable CI for blast packages building
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name: Build NPM package | ||
on: | ||
pull_request: | ||
types: [opened, reopened, synchronize] | ||
branches: | ||
- 'main' | ||
push: | ||
branches: | ||
- 'main' | ||
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jobs: | ||
init: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- uses: milaboratory/github-ci/actions/context/init@v4 | ||
with: | ||
version-canonize: false | ||
branch-versioning: main | ||
run: | ||
needs: | ||
- init | ||
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uses: milaboratory/github-ci/.github/workflows/node-simple.yaml@v4-beta | ||
with: | ||
app-name: Blast PL package | ||
app-name-slug: 'blast' | ||
notify-telegram: true | ||
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node-version: '20.x' | ||
is-electron-application: 'false' | ||
always-auth: 'true' | ||
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build-script-name: 'build' | ||
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test: false | ||
test-script-name: 'test' | ||
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publish-script-name: 'release' | ||
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aws-login-enable: true | ||
gcp-login-enable: true | ||
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secrets: | ||
env: | | ||
{ | ||
"PL_REGISTRY_PLATFORMA_OPEN_UPLOAD_URL": ${{ toJSON(secrets.PL_REGISTRY_PLOPEN_UPLOAD_URL) }} | ||
} | ||
AWS_ASSUME_ROLE: ${{ secrets.AWS_CI_IAM_MONOREPO_SIMPLE_ROLE }} | ||
AWS_ASSUME_REGION: "eu-central-1" | ||
|
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GCP_KMS_WORKLOAD_IDENTITY_PROVIDER: ${{ secrets.GCP_KMS_WORKLOAD_IDENTITY_PROVIDER }} | ||
GCP_KMS_SERVICE_ACCOUNT: ${{ secrets.GCP_KMS_SERVICE_ACCOUNT }} | ||
GCP_KMS_LOCATION: ${{ secrets.GCP_KMS_LOCATION }} | ||
GCP_KMS_KEYRING: ${{ secrets.GCP_KMS_KEYRING }} | ||
GCP_KMS_KEY_NAME: ${{ secrets.GCP_KMS_KEY_NAME }} | ||
|
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TELEGRAM_NOTIFICATION_TARGET: ${{ secrets.TG_CHANNEL_MIBUILDS }} | ||
TELEGRAM_API_TOKEN: ${{ secrets.TG_CI_BOT_TOKEN }} |
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/dld/ | ||
pkg-*.tgz | ||
/node_modules/ |
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# Blast software for Platforma Backend | ||
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This package is the catalogue of all supported versions of blast software. | ||
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Unlike most other software packages, it keeps entrypoint descriptors for all blast versions | ||
published earlier. | ||
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As we do not maintain/build the blast itself, the version of this package is not bound to any | ||
specific version of blast, but newer blast version publications produce newer descriptors | ||
(*.sw.json files) in this package. | ||
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## How to release new version of blast | ||
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1. Update `package.json`: | ||
1. Add new artifact for fresh version of blast. | ||
2. Add entrypoints for newly added version of blast. | ||
3. Update default version of blast commands if needed (entrypoints without version suffix). | ||
4. Change version of blast built by default in `pkg:build` and `publish:packages` scripts. | ||
2. Check packaegs and descriptors are built normally | ||
```bash | ||
npm run pkg:build | ||
``` | ||
3. Commit all descriptors generated in `dist` directory. | ||
4. Bump `<minor>` version part in `package.json`. |
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{"name":"@platforma-open/blast:blast_formatter-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_formatter"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blast_formatter-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_formatter"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blast_formatter","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_formatter"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blast_formatter_vdb-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_formatter_vdb"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blast_formatter_vdb-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_formatter_vdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blast_formatter_vdb","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_formatter_vdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blast_vdb_cmd-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_vdb_cmd"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blast_vdb_cmd-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_vdb_cmd"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blast_vdb_cmd","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blast_vdb_cmd"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastdb_aliastool-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdb_aliastool"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastdb_aliastool-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdb_aliastool"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastdb_aliastool","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdb_aliastool"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastdbcheck-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdbcheck"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastdbcheck-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdbcheck"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastdbcheck","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdbcheck"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastdbcmd-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdbcmd"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastdbcmd-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdbcmd"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastdbcmd","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastdbcmd"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastn-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastn"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastn-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastn"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastn","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastn"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastn_vdb-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastn_vdb"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastn_vdb-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastn_vdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastn_vdb","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastn_vdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastp-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastp"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastp-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastp"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastp","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastp"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastx-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastx"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:blastx-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastx"],"envVars":[]}} |
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{"name":"@platforma-open/blast:blastx","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/blastx"],"envVars":[]}} |
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{"name":"@platforma-open/blast:convert2blastmask-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/convert2blastmask"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:convert2blastmask-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/convert2blastmask"],"envVars":[]}} |
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{"name":"@platforma-open/blast:convert2blastmask","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/convert2blastmask"],"envVars":[]}} |
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{"name":"@platforma-open/blast:deltablast-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/deltablast"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:deltablast-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/deltablast"],"envVars":[]}} |
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{"name":"@platforma-open/blast:deltablast","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/deltablast"],"envVars":[]}} |
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{"name":"@platforma-open/blast:dustmasker-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/dustmasker"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:dustmasker-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/dustmasker"],"envVars":[]}} |
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{"name":"@platforma-open/blast:dustmasker","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/dustmasker"],"envVars":[]}} |
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{"name":"@platforma-open/blast:makeblastdb-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makeblastdb"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:makeblastdb-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makeblastdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:makeblastdb","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makeblastdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:makembindex-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makembindex"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:makembindex-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makembindex"],"envVars":[]}} |
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{"name":"@platforma-open/blast:makembindex","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makembindex"],"envVars":[]}} |
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{"name":"@platforma-open/blast:makeprofiledb-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makeprofiledb"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:makeprofiledb-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makeprofiledb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:makeprofiledb","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/makeprofiledb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:psiblast-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/psiblast"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:psiblast-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/psiblast"],"envVars":[]}} |
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{"name":"@platforma-open/blast:psiblast","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/psiblast"],"envVars":[]}} |
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{"name":"@platforma-open/blast:rpsblast-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/rpsblast"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:rpsblast-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/rpsblast"],"envVars":[]}} |
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{"name":"@platforma-open/blast:rpsblast","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/rpsblast"],"envVars":[]}} |
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{"name":"@platforma-open/blast:rpstblastn-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/rpstblastn"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:rpstblastn-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/rpstblastn"],"envVars":[]}} |
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{"name":"@platforma-open/blast:rpstblastn","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/rpstblastn"],"envVars":[]}} |
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{"name":"@platforma-open/blast:segmasker-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/segmasker"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:segmasker-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/segmasker"],"envVars":[]}} |
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{"name":"@platforma-open/blast:segmasker","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/segmasker"],"envVars":[]}} |
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{"name":"@platforma-open/blast:tblastn-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastn"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:tblastn-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastn"],"envVars":[]}} |
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{"name":"@platforma-open/blast:tblastn","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastn"],"envVars":[]}} |
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{"name":"@platforma-open/blast:tblastn_vdb-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastn_vdb"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:tblastn_vdb-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastn_vdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:tblastn_vdb","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastn_vdb"],"envVars":[]}} |
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{"name":"@platforma-open/blast:tblastx-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastx"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:tblastx-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastx"],"envVars":[]}} |
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{"name":"@platforma-open/blast:tblastx","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/tblastx"],"envVars":[]}} |
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{"name":"@platforma-open/blast:windowmasker-2.16.0","binary":{"type":"binary","registry":"milaboratories","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/windowmasker"],"envVars":[]}} | ||
{"name":"@platforma-open/blast:windowmasker-2.16.0","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/windowmasker"],"envVars":[]}} |
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{"name":"@platforma-open/blast:windowmasker","binary":{"type":"binary","registry":"platforma-open","package":"platforma-open/blast/2.16.0/2.16.0-{os}-{arch}.tgz","cmd":["{pkg}/windowmasker"],"envVars":[]}} |
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