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docs(manuscript): update bioarxiv v2 #646

Merged
merged 35 commits into from
Aug 23, 2024
Merged

docs(manuscript): update bioarxiv v2 #646

merged 35 commits into from
Aug 23, 2024

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@cameronraysmith
docs(manuscript): add preprocessing methods
e482ec2 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith self-assigned this Aug 21, 2024
@cameronraysmith cameronraysmith added this to the 0.4.x milestone Aug 21, 2024
@cameronraysmith cameronraysmith added the documentation Improvements or additions to documentation label Aug 21, 2024
@cameronraysmith
docs(manuscript): use v2 cached Fig. 1 and Ext Fig. 1
4118f42 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(manuscript): reduce spacing above title
3e0e59c 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(manuscript): comment showframe and layout to print page layout
a5aba5d 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(manuscript): sync figures lock
2a2ab5b 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(manuscript): use dvipsnames
b7c2618 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(manuscript): use dvipsnamed email color
41f386e 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(manuscript): bold custom caption headings
c59c182 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(manuscript): use bold panel references
b602c35 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(manuscript): update v2 diff file
0d7ea3d
@cameronraysmith
docs(manuscript): use v2 cached figures
11d23f8 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(manuscript): sync figures lock
a147243 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(manuscript): update v2 diff file
4c493ff
@cameronraysmith
docs(manuscript): update methods
538c255 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(manuscript): update v2 diff file
92e8462
@cameronraysmith
docs(manuscript): separate copy and cache tex make targets
83492fd 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
docs(manuscript): update methods
7c23eb7 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(manuscript): update v2 diff file
a21bad1
@cameronraysmith
ci(manuscript): add latex diff to artifacts
406419f 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
docs(manuscript): update comparison sha1
0accd03 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
docs(manuscript): use xelatex and bibtex with latexdiff
92f02f0 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(cid): ignore manuscript workflow
4821cd7 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith added the skip-ci Skip CI workflow label Aug 22, 2024
@cameronraysmith
test(cid): enable diff
711b5f9 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): set concurrency
516c44e 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): declare git safe directory in texlive container
37d63a6 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
test(ci): move compute diff to top of render job
47cefa1 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
docs(manuscript): disable latexdiff view
f0547ac 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): run latexdiff after render
0706ab6 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): add tinytex bin to PATH
cacc4b0 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): use relative path to artifacts
c0c03ce 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): remove unnecessary commands
bc3b542 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
ci(manuscript): add figures lock file to artifact
64d181f 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith marked this pull request as ready for review August 22, 2024 20:42
@cameronraysmith cameronraysmith requested a review from a team as a code owner August 22, 2024 20:42
@cameronraysmith
docs(manuscript): update v2 comparison sha-1
8484462 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith merged commit 8484462 into beta Aug 23, 2024
20 checks passed
@cameronraysmith cameronraysmith deleted the docs-v2 branch August 23, 2024 02:18
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