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fix(plots): pass boxplot flag to parameter posteriors
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Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
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cameronraysmith committed Sep 13, 2024
1 parent 76ffc3f commit 1d71472
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions src/pyrovelocity/plots/_report.py
Original file line number Diff line number Diff line change
Expand Up @@ -57,9 +57,10 @@ def plot_report(
volcano_data: DataFrame,
putative_marker_genes: List[str],
selected_genes: List[str],
vector_field_basis: str = "emb",
cell_state: str = "state_info",
vector_field_basis: str = "umap",
cell_state: str = "clusters",
state_color_dict: Optional[Dict[str, str]] = None,
boxplot: bool = False,
report_file_path: Path | str = "example_plot_report.pdf",
figure_file_path: Path | str = "example_report_figure.dill.zst",
) -> FigureBase:
Expand Down Expand Up @@ -185,6 +186,7 @@ def plot_report(
geneset=selected_genes,
fig=fig,
gs=gs[1, 1:],
boxplot=boxplot,
)

rainbowplot(
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