Log commented section checkpoints in example.sh

scripts/example/example.sh

@@ -59,15 +59,15 @@ fi
 
 # Let us try several requests:
 
-# List all users:
+log_checkpoint "List all users:"
 curl -v --location --request GET 'http://localhost:8080/users?provider=google' --header "Authorization: Bearer $TOKEN"
 
-# List all taxa
+log_checkpoint "List all taxa"
 echo -n "Taxa: "
 curl --location --request GET 'http://localhost:8080/taxa?provider=google' --header "Authorization: Bearer $TOKEN"
 echo
 
-# Create taxon:
+log_checkpoint "Create taxon:"
 curl -v --location --request PUT 'http://localhost:8080/taxa/bbacilliformis?provider=google' \
   --header 'Content-Type: application/json' \
   --header "Authorization: Bearer $TOKEN" \
@@ -76,17 +76,17 @@ curl -v --location --request PUT 'http://localhost:8080/taxa/bbacilliformis?prov
     "description": "Example taxon"
   }'
 
-# List all loci:
+log_checkpoint "List all loci:"
 echo -n "Loci: "
 curl --location --request GET 'http://localhost:8080/taxa/bbacilliformis/loci?provider=google' \
   --header "Authorization: Bearer $TOKEN"
 echo
 
-# Delete locus (mark deprecated):
+log_checkpoint "Delete locus (mark deprecated):"
 curl -v --location --request DELETE 'http://localhost:8080/taxa/bbacilliformis/loci/ftsZ?provider=google' \
   --header "Authorization: Bearer $TOKEN"
 
-# Create locus:
+log_checkpoint "Create locus:"
 for x in locus1 locus2 locus3 locus4 locus5 locus6 locus7; do
   curl -v --location --request PUT "http://localhost:8080/taxa/bbacilliformis/loci/$x?provider=google" \
     --header 'Content-Type: application/json' \
@@ -97,15 +97,15 @@ for x in locus1 locus2 locus3 locus4 locus5 locus6 locus7; do
     }";
 done
 
-# Load alleles:
+log_checkpoint "Load alleles:"
 for x in 1 2 3 4 5 6 7; do
   curl -v --location --request POST "http://localhost:8080/taxa/bbacilliformis/loci/locus${x}/alleles/files?provider=google" \
     --header 'Content-Type: multipart/form-data' \
     --header "Authorization: Bearer $TOKEN" \
     --form "file=@profiles_${x}.txt" ;
 done
 
-# List alleles:
+log_checkpoint "List alleles:"
 for x in 1 2 3 4 5 6 7; do
   echo -n "Alleles[locus${x}]: "
   curl --location --request GET "http://localhost:8080/taxa/bbacilliformis/loci/locus${x}/alleles?provider=google" \
@@ -118,7 +118,7 @@ curl --location --request GET "http://localhost:8080/taxa/bbacilliformis/loci/lo
   --header "Authorization: Bearer $TOKEN"
 echo
 
-# List all schemas:
+log_checkpoint "List all schemas:"
 echo -n "Schemas: "
 curl --location --request GET 'http://localhost:8080/taxa/bbacilliformis/schemas?provider=google' \
   --header "Authorization: Bearer $TOKEN"
@@ -128,7 +128,7 @@ curl --location --request GET 'http://localhost:8080/taxa/bbacilliformis/schemas
   --header "Authorization: Bearer $TOKEN"
 echo
 
-# Create schema:
+log_checkpoint "Create schema:"
 curl -v --location --request PUT "http://localhost:8080/taxa/bbacilliformis/schemas/mlst7?provider=google" \
   --header 'Content-Type: application/json' \
   --header "Authorization: Bearer $TOKEN" \
@@ -140,12 +140,12 @@ curl -v --location --request PUT "http://localhost:8080/taxa/bbacilliformis/sche
 	  "loci": ["locus1", "locus2", "locus3", "locus4", "locus5", "locus6", "locus7"]
   }';
 
-# List all projects:
+log_checkpoint "List all projects:"
 echo -n "Projects: "
 curl --location --request GET 'http://localhost:8080/projects?provider=google' --header "Authorization: Bearer $TOKEN"
 echo
 
-# Create project:
+log_checkpoint "Create project:"
 curl -v --location --request POST 'http://localhost:8080/projects?provider=google' \
   --header 'Content-Type: application/json' \
   --header "Authorization: Bearer $TOKEN" \
@@ -174,13 +174,13 @@ else
 fi
 
 
-# List all datasets:
+log_checkpoint "List all datasets:"
 echo -n "Datasets: "
 curl --location --request GET "http://localhost:8080/projects/$PROJECT/datasets?provider=google" \
   --header "Authorization: Bearer $TOKEN"
 echo
 
-# Create dataset:
+log_checkpoint "Create dataset:"
 curl -v --location --request POST "http://localhost:8080/projects/$PROJECT/datasets?provider=google" \
   --header 'Content-Type: application/json' \
   --header "Authorization: Bearer $TOKEN" \
@@ -206,13 +206,13 @@ else
   echo "ok DATASET is defined."
 fi
 
-# Load profiles:
+log_checkpoint "Load profiles:"
 curl -v --location --request POST "http://localhost:8080/projects/$PROJECT/datasets/$DATASET/profiles/files?provider=google" \
   --header 'Content-Type: multipart/form-data' \
   --header "Authorization: Bearer $TOKEN" \
   --form 'file=@profiles.txt'
 
-# List profiles:
+log_checkpoint "List profiles:"
 echo -n "Profiles: "
 curl --location --request GET "http://localhost:8080/projects/$PROJECT/datasets/$DATASET/profiles?provider=google" \
   --header "Authorization: Bearer $TOKEN"
@@ -224,7 +224,7 @@ for x in $(seq 10); do
   echo;
 done
 
-# Run inference:
+log_checkpoint "Run inference:"
 curl -v --location --request POST "http://localhost:8080/projects/$PROJECT/jobs?provider=google" \
   --header 'Content-Type: application/json' \
   --header "Authorization: Bearer $TOKEN" \
@@ -234,7 +234,7 @@ curl -v --location --request POST "http://localhost:8080/projects/$PROJECT/jobs?
     \"parameters\": [\"$DATASET\", 3]
   }"
 
-# List inferences:
+log_checkpoint "List inferences:"
 echo -n "Inferences: "
 curl --location --request GET "http://localhost:8080/projects/$PROJECT/datasets/$DATASET/inferences?provider=google" \
   --header "Authorization: Bearer $TOKEN"