Allow containers to start before initializing. Improve example.sh. #13

	name: phyloDB CI tests

	on:
	push:
	branches: [ "master" ]
	pull_request:
	branches: [ "master" ]

	permissions:
	contents: read

	jobs:
	build:

	runs-on: ubuntu-latest

	services:
	neo4j:
	image: neo4j:5.13.0-community
	env:
	NEO4J_AUTH: neo4j/password
	NEO4J_dbms_memory_pagecache_size: 1G
	NEO4J_dbms.memory.heap.initial_size: 2G
	NEO4J_dbms_memory_heap_max__size: 2G
	NEO4J_dbms_security_procedures_unrestricted: apoc.,algorithms.
	NEO4J_dbms_security_procedures_whitelist: apoc.,algorithms.
	NEO4J_dbms_connector_bolt_advertised__address: localhost:7687
	NEO4JLABS_PLUGINS: '["apoc", "apoc-extended"]'
	volumes:
	- /home/runner/work/phyloDB/instance/plugins:/var/lib/neo4j/plugins
	ports:
	- 7687:7687
	options: --name neo4j

	steps:
	- uses: actions/checkout@v3
	- name: Set up JDK 17
	uses: actions/setup-java@v3
	with:
	java-version: '17'
	distribution: 'temurin'
	- name: Build and test
	run: \|
	cd algorithms
	mvn -q package
	sudo cp target/algorithms-1.0.jar /home/runner/work/phyloDB/instance/plugins
	sudo ls -l /home/runner/work/phyloDB/instance/plugins
	docker restart neo4j
	mvn -q test
	cd ../phylodb
	./gradlew test --tests pt.ist.meic.phylodb.unit*

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