Padhraig Gormley
Massachusetts General Hospital | Broad Institute of MIT and Harvard.
Script for calculating polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.
PLINK (https://www.cog-genomics.org/plink2)
Open your bash or other shell. Then to run the script with the supplied toy data type:
./calc-PRS-scores.sh myStudyName imputedSampleRootName GWASresultsFile