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Merge pull request #558 from pato-ontology/release-2024-03-28
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Add v2024-03-28 release artefacts
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@rays22
rays22 authored Mar 28, 2024
2 parents 42128a5 + 140ccfb commit 18eb34f
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59 changes: 33 additions & 26 deletions pato-base.json
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Expand Up @@ -25,9 +25,9 @@
"val" : "1.2"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-05-18"
"val" : "2024-03-28"
} ],
"version" : "http://purl.obolibrary.org/obo/pato/releases/2023-05-18/pato-base.json"
"version" : "http://purl.obolibrary.org/obo/pato/releases/2024-03-28/pato-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/BFO_0000050",
Expand Down Expand Up @@ -20564,14 +20564,13 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/PATO_0001470",
"lbl" : "proportionality to",
"lbl" : "ratio",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.",
"xrefs" : [ "PATOC:nw" ]
"val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in proportion to the magnitude of another entity."
},
"comments" : [ "Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right." ],
"comments" : [ "Examples: height to weight; brain size to body size; root to shoot ratio; urinary sodium to potassium ratio. waist-hip ratio." ],
"subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ],
"synonyms" : [ {
"pred" : "hasExactSynonym",
Expand All @@ -20581,10 +20580,10 @@
"val" : "proportionality"
}, {
"pred" : "hasExactSynonym",
"val" : "quotient"
"val" : "proportionality to"
}, {
"pred" : "hasExactSynonym",
"val" : "ratio"
"val" : "quotient"
}, {
"pred" : "hasRelatedSynonym",
"val" : "rate"
Expand Down Expand Up @@ -44818,12 +44817,11 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/PATO_0040042",
"lbl" : "decreased proportionality to",
"lbl" : "decreased ratio",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A proportionality quality inhering in a bearer by virtue of the bearer's decreased magnitude in respect to a related entity.",
"xrefs" : [ "https://orcid.org/0000-0001-5208-3432" ]
"val" : "A decreased quality inhering in a bearer by virtue of the bearer's decreased magnitude in proportion to the magnitude of another entity."
},
"comments" : [ "Example: decreased proportion of CD4 T cells relative to total T cells." ],
"subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ],
Expand All @@ -44835,10 +44833,10 @@
"val" : "decreased proportionality"
}, {
"pred" : "hasExactSynonym",
"val" : "decreased quotient"
"val" : "decreased proportionality to"
}, {
"pred" : "hasExactSynonym",
"val" : "decreased ratio"
"val" : "decreased quotient"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/contributor",
Expand All @@ -44850,12 +44848,11 @@
}
}, {
"id" : "http://purl.obolibrary.org/obo/PATO_0040043",
"lbl" : "increased proportionality to",
"lbl" : "increased ratio",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A proportionality quality inhering in a bearer by virtue of the bearer's increased magnitude in respect to a related entity.",
"xrefs" : [ "https://orcid.org/0000-0001-5208-3432" ]
"val" : "An increased quality inhering in a bearer by virtue of the bearer's increased magnitude in proportion to the magnitude of another entity."
},
"comments" : [ "Example: increased proportion of CD4 T cells relative to total T cells." ],
"subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ],
Expand All @@ -44867,10 +44864,10 @@
"val" : "increased proportionality"
}, {
"pred" : "hasExactSynonym",
"val" : "increased quotient"
"val" : "increased proportionality to"
}, {
"pred" : "hasExactSynonym",
"val" : "increased ratio"
"val" : "increased quotient"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/contributor",
Expand Down Expand Up @@ -48931,6 +48928,14 @@
"id" : "http://www.geneontology.org/formats/oboInOwl#consider",
"lbl" : "consider",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"lbl" : "created by",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"lbl" : "creation date",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId",
"lbl" : "has_alternative_id",
Expand Down Expand Up @@ -48963,6 +48968,10 @@
"id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym",
"lbl" : "has_related_synonym",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#id",
"lbl" : "id",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#inSubset",
"lbl" : "in_subset",
Expand Down Expand Up @@ -56564,14 +56573,6 @@
"sub" : "http://purl.obolibrary.org/obo/PATO_0040041",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PATO_0040034"
}, {
"sub" : "http://purl.obolibrary.org/obo/PATO_0040042",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PATO_0001470"
}, {
"sub" : "http://purl.obolibrary.org/obo/PATO_0040043",
"pred" : "is_a",
"obj" : "http://purl.obolibrary.org/obo/PATO_0001470"
}, {
"sub" : "http://purl.obolibrary.org/obo/PATO_0040044",
"pred" : "is_a",
Expand Down Expand Up @@ -59125,6 +59126,12 @@
"propertyId" : "http://purl.obolibrary.org/obo/RO_0015008",
"fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461"
} ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/PATO_0040042",
"genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470", "http://purl.obolibrary.org/obo/PATO_0002301" ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/PATO_0040043",
"genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470", "http://purl.obolibrary.org/obo/PATO_0002300" ]
}, {
"definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045000",
"genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000161" ],
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32 changes: 17 additions & 15 deletions pato-base.obo
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: pato/releases/2023-05-18/pato-base.owl
data-version: pato/releases/2024-03-28/pato-base.owl
subsetdef: abnormal_slim "Abnormal/normal slim"
subsetdef: absent_slim "Absent/present slim"
subsetdef: attribute_slim "Attribute slim"
Expand All @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
property_value: IAO:0000700 PATO:0000001
property_value: owl:versionInfo "2023-05-18" xsd:string
property_value: owl:versionInfo "2024-03-28" xsd:string

[Term]
id: CL:0000000
Expand Down Expand Up @@ -9504,16 +9504,16 @@ is_a: PATO:0000406 ! curved

[Term]
id: PATO:0001470
name: proportionality to
def: "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." [PATOC:nw]
comment: Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right.
name: ratio
def: "A quality inhering in a bearer by virtue of the bearer's magnitude in proportion to the magnitude of another entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140"}
comment: Examples: height to weight; brain size to body size; root to shoot ratio; urinary sodium to potassium ratio. waist-hip ratio. {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140"}
subset: attribute_slim
subset: relational_slim
synonym: "proportion" EXACT []
synonym: "proportionality" EXACT []
synonym: "proportionality to" EXACT []
synonym: "quotient" EXACT []
synonym: "rate" RELATED []
synonym: "ratio" EXACT []
is_a: PATO:0001018 ! physical quality

[Term]
Expand Down Expand Up @@ -20668,28 +20668,30 @@ property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001

[Term]
id: PATO:0040042
name: decreased proportionality to
def: "A proportionality quality inhering in a bearer by virtue of the bearer's decreased magnitude in respect to a related entity." [https://orcid.org/0000-0001-5208-3432]
name: decreased ratio
def: "A decreased quality inhering in a bearer by virtue of the bearer's decreased magnitude in proportion to the magnitude of another entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140", http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-5208-3432"}
comment: Example: decreased proportion of CD4 T cells relative to total T cells.
subset: relational_slim
synonym: "decreased proportion" EXACT []
synonym: "decreased proportionality" EXACT []
synonym: "decreased proportionality to" EXACT []
synonym: "decreased quotient" EXACT []
synonym: "decreased ratio" EXACT []
is_a: PATO:0001470 ! proportionality to
intersection_of: PATO:0001470 ! ratio
intersection_of: PATO:0002301 ! decreased quality
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5208-3432

[Term]
id: PATO:0040043
name: increased proportionality to
def: "A proportionality quality inhering in a bearer by virtue of the bearer's increased magnitude in respect to a related entity." [https://orcid.org/0000-0001-5208-3432]
name: increased ratio
def: "An increased quality inhering in a bearer by virtue of the bearer's increased magnitude in proportion to the magnitude of another entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140", http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-5208-3432"}
comment: Example: increased proportion of CD4 T cells relative to total T cells.
subset: relational_slim
synonym: "increased proportion" EXACT []
synonym: "increased proportionality" EXACT []
synonym: "increased proportionality to" EXACT []
synonym: "increased quotient" EXACT []
synonym: "increased ratio" EXACT []
is_a: PATO:0001470 ! proportionality to
intersection_of: PATO:0001470 ! ratio
intersection_of: PATO:0002300 ! increased quality
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5208-3432

[Term]
Expand Down Expand Up @@ -22516,7 +22518,7 @@ creation_date: 2020-10-30T08:08:48Z
id: PATO:0095001
name: organismal area to mass ratio
def: "Quotient (or ratio) of surface area of an organism divided by the mass of the same organism" []
is_a: PATO:0001470 ! proportionality to
is_a: PATO:0001470 ! ratio
is_a: PATO:0001995 ! organismal quality
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-2908-3327
property_value: http://purl.org/dc/elements/1.1/date "2021-05-17T13:13:52Z" xsd:dateTime
Expand Down
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