tahiri-lab

All

25 repositories

ClonalTreeClustering
Public
B-cell lymphocyte clustering project
C++
•0•2•0•0•Updated Dec 2, 2024Dec 2, 2024
py_madaclim
Public
A simple Python API to interact with the Madaclim database
python data-science environment raster climate-data biogeography
Python
•
MIT License
•1•1•0•0•Updated Nov 30, 2024Nov 30, 2024
aPhyloGeo
Public
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
algorithms distance phylogenetics phylogeography consensus-tree biogeography python bioinformatics
Python
•
Other
•8•10•2•0•Updated Nov 29, 2024Nov 29, 2024
PrimConsTree
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
Cumacea_aPhyloGeo
Public
Python
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
iPhyloGeo_plus_plus
Public
Python
•4•1•0•0•Updated Nov 25, 2024Nov 25, 2024
scipy_proceedings_2024
Public
Tools used to generate the SciPy conference proceedings
Python
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Other
•527•0•0•0•Updated Nov 23, 2024Nov 23, 2024
KNCL
Public
A solution designed to complete 2 phylogenetic trees defined on different but mutually overlapping sets of taxa on the union of their taxa sets and compute the Branch Score Distance between the completed phylogenetic trees.
Jupyter Notebook
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 8, 2024Nov 8, 2024
GPTree
Public
This generator can be used to generate a specified number of phylogenetic trees (or clusters of trees in the cluster version) in Newick format with a variable number of leaves and with some level of overlap between trees in clusters.
bioinformatics phylogenetic-trees phylogenetics
Jupyter Notebook
•
MIT License
•0•2•0•1•Updated Sep 9, 2024Sep 9, 2024
phyTransformer
Public
phyTransformer
Jupyter Notebook
•0•0•0•0•Updated Aug 21, 2024Aug 21, 2024
iPhyloGeo
Public
Python
•3•1•2•2•Updated Aug 13, 2024Aug 13, 2024
aPhyloGeo.sm
Public
Host-Virus Cophylogeny Trajectories: Investigating Molecular Relationships between Coronaviruses and Bat Hosts
HTML
•
MIT License
•0•1•0•0•Updated Jun 26, 2024Jun 26, 2024
QSAR
Public
QSAR Predictive Modeling for Evaluating Contaminant Transfer
Jupyter Notebook
•
MIT License
•1•1•20•0•Updated Jun 20, 2024Jun 20, 2024
phyDBSCAN
Public
phyDBSCAN: Building alternative phylogenetic trees using DBSCAN and Robinson and Foulds distance
bioinformatics clustering classification dbscan phylogeny consensus-tree supertree robinson-foulds
C++
•
MIT License
•0•2•0•0•Updated Jun 5, 2024Jun 5, 2024
aPhyloGeoML
Public
Python
•0•0•0•0•Updated Jan 1, 2024Jan 1, 2024
super-RF
Public
C++
•0•0•0•0•Updated Sep 4, 2023Sep 4, 2023
KMeansPhyloTreesClustering
Public
C++
•
MIT License
•0•1•0•0•Updated Aug 25, 2023Aug 25, 2023
scipy_proceedings
Public
Tools used to generate the SciPy conference proceedings
Python
•
Other
•527•0•0•0•Updated Jul 30, 2023Jul 30, 2023
CovidEvoML
Public
0•0•0•0•Updated Jul 7, 2023Jul 7, 2023
iPhyloGeo.js
Public
Jupyter Notebook
•0•0•0•0•Updated May 23, 2023May 23, 2023
KMeansSuperTreeClustering
Public
C++
•
MIT License
•0•0•0•0•Updated May 12, 2023May 12, 2023
aPhyloGeo-pipeline
Public
Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree
workflow phylogenetics phylogeography neighbor-joining raxml sliding-windows fasttree robinson-foulds
Python
•
MIT License
•0•8•0•0•Updated Apr 13, 2023Apr 13, 2023
alignClust
Public
PostScript
•0•0•0•0•Updated Nov 22, 2022Nov 22, 2022
source-code
Public
C
•0•0•0•0•Updated Feb 9, 2022Feb 9, 2022
PhyloClust
Public
C++
•0•0•0•0•Updated Jan 22, 2022Jan 22, 2022